PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO01317.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 600aa    MW: 63786.7 Da    PI: 8.4218
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO01317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-085782227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt+lC+ +     Ck+Gd+C+FaHg+
  POO01317.1 57 KTRLCNKYNSAEGCKFGDKCHFAHGE 82
                8***********************96 PP

2zf-CCCH31.62.7e-10220244126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C +f + G C +GdrC+FaHg
  POO01317.1 220 FKTKICENFTK-GSCAFGDRCHFAHG 244
                 69*********.*************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    
TSGCPFGEGC HFSHYVPGGF QAVSQMINIG GSPALPPVRN PAVPPSFPDG SSPPAVKTRL  60
CNKYNSAEGC KFGDKCHFAH GEWELGRPTA PSYEDQRTLG PFPSRLGGRI EPPPHSHALA  120
ASFGASSTAK ISVDASLSGA IIGKHGVNSK QICRVTGAKL YVRDHESDPN VKYIELEGTF  180
DQINQASAMV RELILNVGSA KEKHGKTFLG TGHPGTAGNF KTKICENFTK GSCAFGDRCH  240
FAHGAEELRK FHCFALAPPP PPPPPLLLPK LIHLFKMATT TAAAFSLQMA TARPCISSSR  300
GAWKAGPAML QSGYKGASWA KLSSACHISS SAQLFGRSFT SSSIKFDKAV VKAMSETSEN  360
KHVAGLPINL KGKRAFIAGV ADDNGYGWAI AKALAAAGAE ILVGTWVPAL NIFESSLRRG  420
KFDESRMLPD GSLMEITKVY PLDAVFDNPE DVPEDIKANK RYAGSSNWTV QEVAETVKND  480
FGSIDILVHS LANGPEVLAF EAGRKHKVRV NTISAGPLRS RAAKAIGFID MMIDYSIANA  540
PLQKELSAEE VGNAAAFLAS PLASAITGAV IYVDNGLHAM GVGVDSPIFK DLDIPKDEHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-57C3H family protein