PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | POO00969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 850aa MW: 93201.2 Da PI: 6.2485 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.8e-18 | 23 | 81 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ POO00969.1 23 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81 6789*****************************************************97 PP | |||||||
2 | START | 174.6 | 6.2e-55 | 172 | 379 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d+ W ++++ +++l vi +g g+++l ++++ POO00969.1 172 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRTSWFRDCRCVDVLSVIPTGngGTIELVYMQT 269 68999*****************************************************.8888888888****************************** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l++ Rdf+++Ry+ +l++ ++vi+++S++s++ p ss +vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s+ + ++ POO00969.1 270 YAPTTLAAaRDFWTLRYTTSLEDNSLVICERSLTSTTGGPAgpaSSCFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQ 368 ****************************************9999999**************************************************** PP HHHHHHTXXXX CS START 194 ktwvatlqrqc 204 k++va+l++ + POO00969.1 369 KMTVAALRHIR 379 *******9865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 850 aa Download sequence |
MALVMHKDSS ANSINNKQMD TSKYVRYTPE QVEALERVYS ECPKPSSLRR QQLIRECPIL 60 SNIEPKQIKV WFQNRRCREK QRKEASRLQT VNRKLTAMNK LLMEENDRLQ KQVSHLVYEN 120 GYMRNQLQTA SGTTTDNSCE SVVMSGQNQQ QQNPTPQQPQ RDANNPAGLL AIAEETLAEF 180 LSKATGTAVD WVQMIGMKPG PDSIGIVAVS RNCSGVAARA CGLVSLEPTK VAEILKDRTS 240 WFRDCRCVDV LSVIPTGNGG TIELVYMQTY APTTLAAARD FWTLRYTTSL EDNSLVICER 300 SLTSTTGGPA GPASSCFVRA EMLPSGFLIR PCEGGGSIIH IVDHVDLDAW SVPEVLRPLY 360 ESSKILAQKM TVAALRHIRQ IAQESSGEIQ YGGGRQPAVL RTFSQRLCRG FNDAVNGFSD 420 DGWSLLGSDG VEDVTIVVNS SSNKFLGSQY SASIFPTFGG VLCAKASMLL QNVPPALLVR 480 FLREHRSEWA DYGVDAYSAS CLKASPYAIP CARPGGFPSS QVILPLAHTV EHEEFLEVVR 540 LEGHAFSPEE VALARDMYLL QLCSGVDENA VGSCAQLVFA PIDESFADEA PLLPSGFRVI 600 PLDPKADMPG ATRTLDLAST LEVGSGSARP ASEADPNSYN LRSVLTIAFQ FTFENHTRDN 660 VAAMARQYVR SVVGSVQRVA MAIAPSRLSS HLGPKPLPQS PEALTLAQWI CRSYRIHTGG 720 DIFQVDSPSG DAVLKRLWHH SDAIMCCSVK TNASPVFTFA NQAGLDMLET TLVALQDIML 780 DKILDEAGRK ILCSEFSKIM QQGFAYLPAG ICVSSMGRAA SYEQAVAWKV LNDEDSNHCL 840 AFMFMNWSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |