PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO00938.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

GeBP

Protein Properties

Length: 266aa MW: 31453.4 Da PI: 9.2235

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO00938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	70.4	3.7e-22	84	178	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 f+r ws + e+++L+ l+ f++k++ +ps+ +++fy ++kk i ++++ k ql++K+rr+K Kf++k++k + + + ++dq if+ls+ iWg POO00938.1 84 PFKRFWSPKHELIILKRLMRFAEKKKCKPSQvKMSKFYAYLKKIItDLDFDKIQLSDKVRRMKTKFENKMRK---KPDSVYPDKKDQRIFQLSELIWG 178 599***********************9999*******99459*******************9...888999**************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MEDDRHSHLQ NEENHHEDHQ VGLNGNQNNH HHDYESASEV ERAARKRRRV RNDDAEAMVQ 60 NEDEDEEEEE AAFDEVSDNN KLQPFKRFWS PKHELIILKR LMRFAEKKKC KPSQVKMSKF 120 YAYLKKIITD LDFDKIQLSD KVRRMKTKFE NKMRKKPDSV YPDKKDQRIF QLSELIWGNE 180 MRAVAKNVTS RSEESVNKDF AEMLKQINTD HKNSLLDGLT TMIATPVKAE LARKWQILHF 240 DYFRSRSRIE QKVFSLALGK SGSSSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	49	RKRRR
2	46	50	KRRRV
3	143	157	RRMKTKFENKMRKKP
4	144	156	RMKTKFENKMRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	6e-11	GeBP family protein