PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO00742.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 493aa    MW: 54846.7 Da    PI: 5.8017
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO00742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.31.5e-90634902373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaal................ 81 
                 ++lL++cA+a++++d +laq++L+ l+++aspdgd++qRl++ f++AL +r ar++ ++ k l++  ++++         +                  
  POO00742.1  63 EQLLVHCANAIEANDVTLAQQILWVLNNIASPDGDSNQRLTSAFLRALISRAARTGGSCIKMLASAFARPMIpvqP---HNDIdldvvfhdgalphrfs 158
                 79****************************************************9999999998877776664331...22223557778899999998 PP

        GRAS  82 ....klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAee 171
                      +f +++P+++f++ +aN aIleaveg + vH++D++ ++++Q p+L +a+asR  e pp +++T+ ++++ +       ++ee+g +L +fA++
  POO00742.1 159 vidfATFIDLTPWHRFGFTAANAAILEAVEGFSVVHVVDLSSTHCMQIPTLVDAIASRHyEVPPLIKLTVAAEADDVvppiLDMSYEELGLKLVNFARS 257
                 888788*****************************************************77899*********888799988899************** PP

        GRAS 172 lgvpfefnvl...vakrledleleeLrvkp.......gEalaVnlvlqlhrll.......................desvsleserdevLklvkslsPk 237
                  ++ +ef+v+    ++ +++l +e+Lrv++        Eal++n++++lh+++                        +++s+ s r+ +Lk ++sl P+
  POO00742.1 258 RNIMLEFRVVpstSSDGFACL-IEHLRVQHlvnypetPEALVINCHMMLHYIPeetlndvslhtttttttttttttTSTTSTCSLRSMFLKSIRSLDPN 355
                 *********987534455555.7777777666677999***********************************99877777777899************ PP

        GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                 vvv+v+++ad++s++++ r+ +a+++ +  +d++++ lp+ s++r+++E+  + ++i+nv+a+ega+r+er e ++kW +r+++a F++v ++e+a+++
  POO00742.1 356 VVVLVDEDADLTSNNLVCRLRSAFNFLWIPYDTVDTFLPKGSKQRQWYEAD-ICWKIENVIANEGAQRVERLEPKSKWVQRMRNANFRSVGFGEDAVSE 453
                 ***************************************************.*********************************************** PP

        GRAS 337 aklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                 +k++l +++  g+ ++ e+++ lvl+Wk++++v++++W
  POO00742.1 454 VKTMLDEHA-AGWGLKrEDEDHLVLTWKGHNVVFATVW 490
                 *********.6677765778899*************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    
MMQFTTTTAT HESPSSTSPL LLPPILCNNL PIMNKTQLGR GRPWPGFPTS KALGSFGDAN  60
CMEQLLVHCA NAIEANDVTL AQQILWVLNN IASPDGDSNQ RLTSAFLRAL ISRAARTGGS  120
CIKMLASAFA RPMIPVQPHN DIDLDVVFHD GALPHRFSVI DFATFIDLTP WHRFGFTAAN  180
AAILEAVEGF SVVHVVDLSS THCMQIPTLV DAIASRHYEV PPLIKLTVAA EADDVVPPIL  240
DMSYEELGLK LVNFARSRNI MLEFRVVPST SSDGFACLIE HLRVQHLVNY PETPEALVIN  300
CHMMLHYIPE ETLNDVSLHT TTTTTTTTTT TTTSTTSTCS LRSMFLKSIR SLDPNVVVLV  360
DEDADLTSNN LVCRLRSAFN FLWIPYDTVD TFLPKGSKQR QWYEADICWK IENVIANEGA  420
QRVERLEPKS KWVQRMRNAN FRSVGFGEDA VSEVKTMLDE HAAGWGLKRE DEDHLVLTWK  480
GHNVVFATVW MPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-179GRAS family protein