PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO00586.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 380aa    MW: 41937 Da    PI: 7.3787
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO00586.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-08140160526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G+Ck Gd+C FaHg
  POO00586.1 140 ACPDFRK-GHCKKGDSCEFAHG 160
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    
MMLGEQHRPN PTVHVPPWNL TVEDPTAEMY SPFPLSGVSV NSDCNGGDYS PYYLQEALSA  60
LSPYLPSAND PDIDSDSDVS GRESDSPIDA YSCDQFRMFE FKVRRCARGR SHDWTECPYA  120
HPGEKARRRD PRKYHYSGTA CPDFRKGHCK KGDSCEFAHG VFECWLHPAR YRTQPCKDGT  180
SCRRRVCFFA HTPDQLRVLP QQSPKAGSNS AESYDGSPLR KTLPFLSSPS SISPPATPQA  240
ESPPMSPMTQ VLSRSLGSSS INEMVASLRN LQLGKVKSLP SCWNTQKGGS PGFGSPRGSL  300
LRPGFCSLPT TPTRGPARPS YLDFCDPTLE EEPAMERVES GRDLRAKMLE KLSKENSLDR  360
VDPNPSAGAP DVGWVSELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-136C3H family protein