PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO00310.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 374aa    MW: 41170.7 Da    PI: 9.1599
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO00310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.6e-10427226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                k e Cr+f+r G C+yG rCkF H+
  POO00310.1  4 KKEVCRNFQR-GSCQYGQRCKFLHV 27
                789*******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MPVKKEVCRN FQRGSCQYGQ RCKFLHVTSQ QQKPPNNIFS YQQQQQQKPN PYGFGVQNNP  60
QPKGAPDFGS KSNQFKPFEN SWTRSSAHTA TSTSEKQSQA TNHKCTDPES CRRIIVEDFE  120
QERPLWRLTC YGHWKNAPCD IVGDISYEEL RAAAYDDAKR GLSLPSIVDR ERNLVNSKVL  180
EFENLCKSGS TTRNSTPANQ NTFPVTGPNA FSQNAQGAPA SVSSFSQLGT SLNMGFGPRH  240
PAPLNNPVVQ PNPFGVSGQT SSAFGIKDLS SQSQGSTFTP TPFFGNNSFM RAESNPFTTS  300
TVSNQFLGAT NNHSPVPFMG LNFSSNANGP VTTELQQGFR KKHLQMHFVT RNSNACCAVT  360
GKTLISSELE VAFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-62C3H family protein