PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | POO00227.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | C2H2 | ||||||||
Protein Properties | Length: 529aa MW: 58355.1 Da PI: 5.4364 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.9 | 9.5e-07 | 275 | 296 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H POO00227.1 275 FCAICGKGFKRDANLRMHMRGH 296 6*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence |
MDLEEELCAG EWANSSSGSE LTKELSSDHP SYSDFNSQQC QQKWDNASMI GFGIGIETSF 60 QGYDRPSVVQ GGVPLNLNNQ AKILGQEDVQ MHDTQQTNKI PDWDPNAMLN NLSFLEEKIH 120 QLQDLVQLIA GRRGQVLGQP DELVFQQQQL VTADLTSIIA QLISTAGSLL PSVKNTLPAV 180 VPSMGHLGQP GRVNLAPGLG MNDDVQPQKN GGSKTSEESN QTDMTGNYVA EHNNLLDEHE 240 LKDEEDADEG ENLPPGTYEI LQLEKEEILA PHTHFCAICG KGFKRDANLR MHMRGHGDEY 300 KTPAALAKPH KDPGSEPVVI KRYSCPYAGC KRNKDHKKFQ PLKTILCVKN HYKRTHCDKS 360 YTCSRCNIKK FSVIADLKTH EKHCGKDKWL CSCGTTFSRK DKLFGHIALF QGHTPAIPFD 420 EARGNVGPAD HPTEIEATNK GSVNSVNFNF RSTTPGEAAA QDIMDLNGGL DDPTACFSPL 480 NFENCNFGGF HEFPRPPFED SESSFSFLLS GSCSYPPKTR GESSSNNLE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-173 | C2H2 family protein |