PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO00015.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

AP2

Protein Properties

Length: 426aa MW: 48302.8 Da PI: 9.0748

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO00015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.4	3e-12	86	142	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a++k++g POO00015.1 86 SRFRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 142 789****************88887786625555.******************98 PP
2	AP2	50.6	4.9e-16	185	236	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g POO00015.1 185 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 236 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MNQLSLAVSH KENKRPDMEM TVKSELCPGK RHVCLFEGDN NATPAKCVKR RRRDSTAVLL 60 SCKDQQGEDQ SATTTTTTTT TVKRSSRFRG VSRHRWTGRY EAHLWDKGSW NPTQRKKGKQ 120 GAYDEEESAA RAYDLAALKY WGPSTFTNFP VSEYEKEIEI MKNVTKEEYL ASLRRRSSGF 180 SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYSTQ EEAAHAYDIA AIEYRGINAV 240 TNFDLSTYIR WLRPVSSSLG TQEPKPLTTA TTTTTRNSQP LTTFSYLIPG NERRDTSSFF 300 HPNPFAVDDL EASKRQDILQ QQQLQTPISP CSNSNSPSAL GLLFKSSVFR DLVEKNLCTE 360 NEEREENGVK NLAQMKNDNF DMISFDGIGN MNYPGLESHE ESTLSFCNGR GGQSFWNVPL 420 NLSSFN

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MNQLSLAVSH KENKRPDMEM TVKSELCPGK RHVCLFEGDN NATPAKCVKR RRRDSTAVLL  60
SCKDQQGEDQ SATTTTTTTT TVKRSSRFRG VSRHRWTGRY EAHLWDKGSW NPTQRKKGKQ  120
GAYDEEESAA RAYDLAALKY WGPSTFTNFP VSEYEKEIEI MKNVTKEEYL ASLRRRSSGF  180
SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYSTQ EEAAHAYDIA AIEYRGINAV  240
TNFDLSTYIR WLRPVSSSLG TQEPKPLTTA TTTTTRNSQP LTTFSYLIPG NERRDTSSFF  300
HPNPFAVDDL EASKRQDILQ QQQLQTPISP CSNSNSPSAL GLLFKSSVFR DLVEKNLCTE  360
NEEREENGVK NLAQMKNDNF DMISFDGIGN MNYPGLESHE ESTLSFCNGR GGQSFWNVPL  420
NLSSFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-76	AP2 family protein