PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON99948.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 694aa MW: 77088.5 Da PI: 7.3685

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON99948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	103	127	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a+tG C+y d+C+F+H+ PON99948.1 103 ICPEVAKTGdvnSCPYSDKCRFSHD 127 7***********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MDESTEVRLV PDPNDSSGPP PPLSASNGQQ QTPEELVARA IAPVKPGFLR PPPVRPASND 60 KEDGAVSESK EKKTAQPAVV KEKKSKRQLK RERRQQQKSS SNICPEVAKT GDVNSCPYSD 120 KCRFSHDLEA FKAQKLDNLE GECPFVSAEE PCPYGLACRF SSTHQEGVFG TRSTRRNSSE 180 VNGLSKDVQK LLWKNKMSFP KADAKLKALG LLGHANSKAK ILENRKDDQV ASDNCHVANG 240 NCSSALASKD TEIENSAIEE NAGVDDTTES NKPRPLKKPK CVVEESCSGK VEDGDVSVVE 300 KVVSESSKQP EADTTADIIT PEADRSLKVH PREKKIIDFR EKLYLAPLTT VGNLPFRRIC 360 KVLGADVTCG EMAMCTNLLQ GQASEWALLR RHSSEDLFGV QICGAFPDTV ARAVELIDRE 420 CTLDFIDINM GCPIDIVVNK GAGSALLTKP MRMKGIIEAA SGTVEKPLTV KVRTAYFEGK 480 NRIDSLIADI GNWGASAVTI HGRSRQQRYS KLADWEYIYQ CARKAPDDLH VMGNGDIFSY 540 LDWNQHKIDC PKLSTCMIAR GALVKPWIFT EIKEQRHWDI SSEERLNILK NFVKFGLEHW 600 GSDTKGVETT RRFLLEWLSY TCRYIPVGLL DVIPQRLNWR PPSYFGRDDL ETLMASDSAA 660 DWIRISEMLL GKVPEGFTFA PKHKSNAYDR AENG

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MDESTEVRLV PDPNDSSGPP PPLSASNGQQ QTPEELVARA IAPVKPGFLR PPPVRPASND  60
KEDGAVSESK EKKTAQPAVV KEKKSKRQLK RERRQQQKSS SNICPEVAKT GDVNSCPYSD  120
KCRFSHDLEA FKAQKLDNLE GECPFVSAEE PCPYGLACRF SSTHQEGVFG TRSTRRNSSE  180
VNGLSKDVQK LLWKNKMSFP KADAKLKALG LLGHANSKAK ILENRKDDQV ASDNCHVANG  240
NCSSALASKD TEIENSAIEE NAGVDDTTES NKPRPLKKPK CVVEESCSGK VEDGDVSVVE  300
KVVSESSKQP EADTTADIIT PEADRSLKVH PREKKIIDFR EKLYLAPLTT VGNLPFRRIC  360
KVLGADVTCG EMAMCTNLLQ GQASEWALLR RHSSEDLFGV QICGAFPDTV ARAVELIDRE  420
CTLDFIDINM GCPIDIVVNK GAGSALLTKP MRMKGIIEAA SGTVEKPLTV KVRTAYFEGK  480
NRIDSLIADI GNWGASAVTI HGRSRQQRYS KLADWEYIYQ CARKAPDDLH VMGNGDIFSY  540
LDWNQHKIDC PKLSTCMIAR GALVKPWIFT EIKEQRHWDI SSEERLNILK NFVKFGLEHW  600
GSDTKGVETT RRFLLEWLSY TCRYIPVGLL DVIPQRLNWR PPSYFGRDDL ETLMASDSAA  660
DWIRISEMLL GKVPEGFTFA PKHKSNAYDR AENG