PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON99889.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GATA
Protein Properties Length: 328aa    MW: 35922.9 Da    PI: 6.8458
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON99889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.82.9e-18250283134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs+C++ kTp+WR gp g ktLCnaCG+++++ +
  PON99889.1 250 CSHCQVQKTPQWRTGPLGAKTLCNACGVRFKSGR 283
                 *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MECMEAKALR PSLRTELTQQ KFLEEFYTTT TTATAGAGVS CVPGDDFSVD ELLNLQNGEF  60
EDGSVLEEGE KDYLFVDDES FHVSGGFFGA GDSESALTSE LAVPDDDLAE LEWVSRFVDD  120
SLSEFSLIHV PIGKQRTGVC TQNRSEPEPR RTGTSPTCFP SVPVRTRTKR ARPTTRTWSR  180
SNSLSPFTES ESSSSSSSSS FSSSPGLTFT NTAQTMEFLQ NLGEPASKKQ KKKPVQTGGG  240
SAGVQLQRRC SHCQVQKTPQ WRTGPLGAKT LCNACGVRFK SGRLFPEYRP ACSPTFCSDV  300
HSNSHRKVLE MRKKKDHGSG LTHVISSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170RTRTKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-53GATA family protein