PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON99768.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 222aa    MW: 24445.5 Da    PI: 9.0996
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON99768.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.43.8e-232370249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                + e ksn+qvtfskRr gi+KKA ELS+LC+ +va i+fs++gkl+ +
  PON99768.1 23 KLEKKSNKQVTFSKRRSGIFKKAGELSILCGSDVAAIVFSPNGKLFCF 70
                6799*****************************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MDIVGDKIKT KRTLGRQKIE IKKLEKKSNK QVTFSKRRSG IFKKAGELSI LCGSDVAAIV  60
FSPNGKLFCF GHPSVDDVIH RYLSGTSTTT SDATTNNPES GTTNGAATGE FNFRAYVEGM  120
RELEAEKKRV AEARLASAST WKEGGFRGSG GVDGAWWDES VEGMELEELE HYLEALQELR  180
RKSSNKVQDL MVRKGGSPPS DPLETFRVPS ARLGFGFENG QF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-27M-type_MADS family protein