PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON99487.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 510aa MW: 55828.1 Da PI: 8.6073

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON99487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	455	479	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 t++C +f + C+ G++C+F H+ PON99487.1 455 NTKPCAYFKTSKGCWNGANCPFQHD 479 589*********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MPKHKKRSRT LKRVSWAPGL DLCQVKLFSS EDCPAKVGMN SQDDLQAKST WTLPSNTKGS 60 NDLPPGFELG FAVGQSGMEL SYIPRIQWKC PPKIVPTPAW QVVSGEESEE VKHQKLREMR 120 VLEAVYPRFS AIPPSPSVSL EVENEYYDDN QTPLVSLTPI EEEESPDTPF DKATPVNTTL 180 SSRQPSLPQV LLPSGTHVSK LDSHSMNPLA STQPSSAKLP DLGADVVATT YTALAAFMTC 240 SKSGNLIDTD LLIKILNDPK MIANLMNNGQ PHAANTGSAP LSVSQTVSSS VPLTFPTLDT 300 QRPADENSFP ISKGVSSALN TVSHQQDARP KSRFQQVMTT PVSTSTPTPT PTPESYFSAP 360 RVLNGNLFSI PNQVTSAANV AGVQPSTVTL STFTVKEPAR PIKDLNYYKN LIRQHGGEKV 420 EKKDSINAQN GENYFYFQDS KPVQNYELGE MKSKNTKPCA YFKTSKGCWN GANCPFQHDV 480 PKQRRAGKVI ESHSAKRMKL NGEIYGSMLV

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MPKHKKRSRT LKRVSWAPGL DLCQVKLFSS EDCPAKVGMN SQDDLQAKST WTLPSNTKGS  60
NDLPPGFELG FAVGQSGMEL SYIPRIQWKC PPKIVPTPAW QVVSGEESEE VKHQKLREMR  120
VLEAVYPRFS AIPPSPSVSL EVENEYYDDN QTPLVSLTPI EEEESPDTPF DKATPVNTTL  180
SSRQPSLPQV LLPSGTHVSK LDSHSMNPLA STQPSSAKLP DLGADVVATT YTALAAFMTC  240
SKSGNLIDTD LLIKILNDPK MIANLMNNGQ PHAANTGSAP LSVSQTVSSS VPLTFPTLDT  300
QRPADENSFP ISKGVSSALN TVSHQQDARP KSRFQQVMTT PVSTSTPTPT PTPESYFSAP  360
RVLNGNLFSI PNQVTSAANV AGVQPSTVTL STFTVKEPAR PIKDLNYYKN LIRQHGGEKV  420
EKKDSINAQN GENYFYFQDS KPVQNYELGE MKSKNTKPCA YFKTSKGCWN GANCPFQHDV  480
PKQRRAGKVI ESHSAKRMKL NGEIYGSMLV