PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON99312.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

AP2

Protein Properties

Length: 354aa MW: 40361.8 Da PI: 6.8875

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON99312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.2	1.7e-12	21	78	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g+ PON99312.1 21 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWGH 78 57*****************99998898888888******************997 PP
2	AP2	51.3	3e-16	120	171	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PON99312.1 120 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 171 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
VQKAKRTRRS VPRDSPPQRS SIYRGVTRHR WTGRYEAHLW DKNCWNESQN KKGRQGAYDD 60 EEAAAHAYDL AALKYWGHET ILNFPLSTYE RELKDMEGVA REEYIGSLRR KSSGFSRGVS 120 KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYATQEEAAT AYDMAAIEYR GLNAVTNFDL 180 SRYIKWLKPN TSTPTYNNIN GNVSLPNPIH TEANVPQNFN QDDHDQLGLG NFFHDVQHIT 240 SNVVGETLFS PSQQPRPATA TSALGLLLQS SKFKEMMEMT SAGADCLLSS PSPPLLPELT 300 DHEPMRFAFP DDMRTYFDDH QCQDHSSSLT YGNDSIFSEL NSLMQPMFPC DFDT

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

VQKAKRTRRS VPRDSPPQRS SIYRGVTRHR WTGRYEAHLW DKNCWNESQN KKGRQGAYDD  60
EEAAAHAYDL AALKYWGHET ILNFPLSTYE RELKDMEGVA REEYIGSLRR KSSGFSRGVS  120
KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYATQEEAAT AYDMAAIEYR GLNAVTNFDL  180
SRYIKWLKPN TSTPTYNNIN GNVSLPNPIH TEANVPQNFN QDDHDQLGLG NFFHDVQHIT  240
SNVVGETLFS PSQQPRPATA TSALGLLLQS SKFKEMMEMT SAGADCLLSS PSPPLLPELT  300
DHEPMRFAFP DDMRTYFDDH QCQDHSSSLT YGNDSIFSEL NSLMQPMFPC DFDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	4e-89	AP2 family protein