PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON98276.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 147aa    MW: 16475.5 Da    PI: 8.4716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON98276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.6e-095779527
                --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                 C++f +tG+C+yGd+Ck+ H++
  PON98276.1 57 VCNRFVKTGFCQYGDSCKYFHPK 79
                6********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MPLGKYHCDY CDKEFQDTPF ARKRHLQGLQ HLRAKALWYD SFKDPNQAYT EGFGKGVCNR  60
FVKTGFCQYG DSCKYFHPKN TVQNLNTQGT SGNNQTLIFH GNQFVGSSSM PGDMAIDRMG  120
ISSGNLPPSL KPPLEGGYPN LPFVDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.15e-48C3H family protein