PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON98166.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HD-ZIP

Protein Properties

Length: 248aa MW: 27578.1 Da PI: 8.3678

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON98166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	83	137	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Lee F+++++++ +++e LA +l+L rqV vWFqNrRa+ k PON98166.1 83 RKKLRLSKEQSRLLEESFRQHHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSK 137 788899***********************************************98 PP
2	HD-ZIP_I/II	118.1	4.8e-38	83	171	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ PON98166.1 83 RKKLRLSKEQSRLLEESFRQHHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 171 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MAILPTTSSS LELTISVPGF SSSPSLPSSV MRDLDINQVP SVGGDQHHDH DHDHQEDQWM 60 EDEEEMMSTS INGTSSTHSG PPRKKLRLSK EQSRLLEESF RQHHTLNPKQ KEALALQLKL 120 RPRQVEVWFQ NRRARSKLKQ TEMECEYLKR WFGSLTEQNR RLQREVEELR AMKVGPPTVL 180 SPHSCEPLPA STLTMCPRCE RVTTTTSSTT TTSAAISITG NHNKAGPTKT IAASTAAALS 240 SKVATPAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	140	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	3e-59	HD-ZIP family protein