PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97842.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 547aa MW: 59096.3 Da PI: 8.8967

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	68	88	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H PON97842.1 68 CEICGKGFQRDQNLQLHRRGH 88 *******************88 PP
2	zf-C2H2	13.2	0.00026	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PON97842.1 142 WKCEKCSKRYAVQSDWKAHSKTC 164 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MAEETIPNGF SQNPIEGSNN IMINPPPLKK KRNLPGTPGK FSFMYVYPEA EVIALSPKTL 60 MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRSSK EPKKRVYVCP EKTCVHHHPS 120 RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYK CDCGTLFSRR 180 DSFITHRAFC DALAEETARV KAASDMNIMN PIMAAAGNIS YHFMGAGSGP NNMTQHFPSV 240 FKPISSNDEA ASATARGLSL WMGGQDQTIM GSPNTTTNNA LQDEIRHHLH HHHHYQLGSV 300 SSASAVFGPD HHHHPLVSCP SSNQPPPSDY HHHQMNWVFG SSTNKISSNN NAHHEELTIS 360 ATCSLPMSNS TVNKEGGSGT QLVSVPSLYS TQLNNSAAAA AANMSATALL QKAAQIGATS 420 SVDTSFLGSF GLKCNNSTTS INTQVQDGNN NVKSCGLYGS TPISSVGSHR NINDNNVENP 480 DGEILQMYPP AAKRRHVLMS SSTAEEAAGG QTRDFLGVGG GGGGSVQTIC HPAAAAAAAA 540 SSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MAEETIPNGF SQNPIEGSNN IMINPPPLKK KRNLPGTPGK FSFMYVYPEA EVIALSPKTL  60
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRSSK EPKKRVYVCP EKTCVHHHPS  120
RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAEETARV KAASDMNIMN PIMAAAGNIS YHFMGAGSGP NNMTQHFPSV  240
FKPISSNDEA ASATARGLSL WMGGQDQTIM GSPNTTTNNA LQDEIRHHLH HHHHYQLGSV  300
SSASAVFGPD HHHHPLVSCP SSNQPPPSDY HHHQMNWVFG SSTNKISSNN NAHHEELTIS  360
ATCSLPMSNS TVNKEGGSGT QLVSVPSLYS TQLNNSAAAA AANMSATALL QKAAQIGATS  420
SVDTSFLGSF GLKCNNSTTS INTQVQDGNN NVKSCGLYGS TPISSVGSHR NINDNNVENP  480
DGEILQMYPP AAKRRHVLMS SSTAEEAAGG QTRDFLGVGG GGGGSVQTIC HPAAAAAAAA  540
SSINGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-125	C2H2 family protein