PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON97806.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 728aa    MW: 81113.1 Da    PI: 6.7843
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON97806.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.5e-202883156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t++q+++Le++F+ +++p++++r++L ++lgL+ +qVk+WFqN+R++ k
  PON97806.1 28 KKSYHRHTTHQIQQLEAFFKDCPHPDENQRRQLGRELGLEPKQVKFWFQNKRTQTK 83
                688899**********************************************9987 PP
2START1211.6e-382214473204
                 HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
       START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.................dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                 a +a +el+k+  ++ep+W k+s+      +++++ ++                    + e ++ sg+v m +a lv  +ld++ +W   ++     a+
  PON97806.1 221 AASAVDELIKLLRLDEPLWIKLSSAAAASNCRYTLHRDSYekmfpmrdnhfrstsstARFESSKHSGLVAMSAAFLVDMFLDSN-KWEDLFPtiiaNAK 318
                 67899******************999999999999887779999***********9999*************************.99999999999*** PP

                 EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
       START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                 t+ev++ g      galqlm  ++  lsplvp R+f+f+R+++q + g wvivdvS d  +++     + R+ +lpSg++i++++ng s v wvehv +
  PON97806.1 319 TIEVLEHGelgnrhGALQLMHEQMHILSPLVPsREFYFLRHCQQNEVGNWVIVDVSYDFSKENI----SPRCWKLPSGCIIQDMPNGCSMVSWVEHVQV 413
                 **************************************************************97....5899*************************** PP

                 -SSXX.HHHHHHHH.HHHHHHHHHHHHHHTXXXX CS
       START 173 kgrlp.hwllrslv.ksglaegaktwvatlqrqc 204
                 +++   h l+r lv +s++a ga +w   l+r  
  PON97806.1 414 DDKNQtHRLYRDLVcNSTTAYGAERWIVSLERMS 447
                 988766*****98648899999999988777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    
MEFEMGSVVG SGDEHDHEAS NSRKGRNKKS YHRHTTHQIQ QLEAFFKDCP HPDENQRRQL  60
GRELGLEPKQ VKFWFQNKRT QTKAQNERAD NSNLRAQNER IQCENLAIRE ALKNVICPSC  120
GGPPFGQEER QRSLHTLQLQ NAQLKEEHEK VSSLLAKYMG KPISEIEKLT SIVPNGSSLE  180
ILPLGISSSS LNVENNQSIL FPNYQVKGIL DMERELMAET AASAVDELIK LLRLDEPLWI  240
KLSSAAAASN CRYTLHRDSY EKMFPMRDNH FRSTSSTARF ESSKHSGLVA MSAAFLVDMF  300
LDSNKWEDLF PTIIANAKTI EVLEHGELGN RHGALQLMHE QMHILSPLVP SREFYFLRHC  360
QQNEVGNWVI VDVSYDFSKE NISPRCWKLP SGCIIQDMPN GCSMVSWVEH VQVDDKNQTH  420
RLYRDLVCNS TTAYGAERWI VSLERMSERF NCCTKLTESI APTYDFGGVI SLAEGKRSIM  480
KLGHRMVKSF CGMLSMSGKL DFPQLSEVNN SGVRVSVRKS TTLGQPLGVI VSAATSLWLP  540
LPPQTVFDFF TNHRSRLQWD VLCNGYPVHE IAHISTGAHP GNFISILRPF IPTENNILML  600
QESFADALGS MIIYAPIDVP ALNVAISGED SSNIPILPSG LIISGDGRTG TDHSSGATNV  660
ESFASSSSNK NYNSASSGSL LTVAFQILVS CPPTCNQMIN MESVATVNTL ISTTVQKIKA  720
SLNCSALD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein