PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97722.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HD-ZIP

Protein Properties

Length: 315aa MW: 35532.8 Da PI: 7.8541

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.9e-19	149	203	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k PON97722.1 149 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 203 788899***********************************************98 PP
2	HD-ZIP_I/II	129.5	1.4e-41	149	238	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l PON97722.1 149 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 238 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MMVEKEDLGL SLSLSFPQNN RHPIQNNKLN LFAPSLSTTT SSSEPSSAFN VNNLHHKPSW 60 NDTFPSSTDR NSETYRVETR TFLRGIDVNR LPSTADCEDD AGVSSPNSTV SSVSGKRSER 120 EANGDENENE MERACSRGIS DEEDGETSRK KLRLSKDQSA ILEESFKEHN TLNPKQKLAL 180 AKQLGLRPRQ VEVWFQNRRA RTKLKQTEVD CEFLKRCCEN LTEENRRLQK EVQELRALKL 240 SPQFYMQMTP PTTLTMCPSC ERVAVPPSTS AAATEARVHH HHQMGPAHPR PIPIGPWAAA 300 TPIPHRPFEA LHPRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	SRKKLRL
2	198	206	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-108	HD-ZIP family protein