PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON96628.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 496aa    MW: 53160.8 Da    PI: 8.5783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON96628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.5e-115379127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++ ++C +++rtG+C yG rC+++H++
  PON96628.1 53 PGVPNCVYYMRTGYCGYGIRCRYNHPR 79
                5789*********************96 PP

2zf-CCCH406.6e-13100124327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C+++++tGtCk+G++CkF+H++
  PON96628.1 100 EPVCQYYLKTGTCKFGASCKFHHPK 124
                 789********************96 PP

3zf-CCCH38.81.6e-12144170127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+++++tG+Ck+G +CkF H++
  PON96628.1 144 PGEAECSYYLKTGQCKFGVTCKFDHPQ 170
                 5789*********************97 PP

4zf-CCCH36.11.1e-11326352127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C+++++tG Ck+G++C+++H++
  PON96628.1 326 PGEPDCQYYLKTGDCKFGSSCRYHHPR 352
                 5789*********************96 PP

5zf-CCCH35.51.6e-11373398227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +  +C f++++G+Ck+G++CkF H++
  PON96628.1 373 GVQPCTFYLQNGHCKFGASCKFDHPM 398
                 5689********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    
MALYGRSPAR NGSNPGHQQE WSPDGGETGL EESMWHLGLT SGGGGGESYP ERPGVPNCVY  60
YMRTGYCGYG IRCRYNHPRD RAAVAAAVRA TGEYPERVGE PVCQYYLKTG TCKFGASCKF  120
HHPKHGGGSL SQAPLNFYGY PLRPGEAECS YYLKTGQCKF GVTCKFDHPQ PAGTSVTASA  180
PQFYPPVQSP SVPMPDQFVG PSTSLRVARP PLLPGSYVQG AYGPVLFPPG VVPMPGWTPY  240
SIFRVDDTLT VSIAIPEWYM RFSPDTAPVS PVLSPGAQPT VGAASMYGVT HLPSSTAALA  300
RPYSSLPSSI GASSSSPKEQ AFPERPGEPD CQYYLKTGDC KFGSSCRYHH PRDRVVPRTN  360
CLLSPMGFPL RQGVQPCTFY LQNGHCKFGA SCKFDHPMGT MRYSPSASSL IDMPVTPYPV  420
GSLLATLAPS STSSDLRPDY SSRMPSSGNT STSSVGLIFS QTVPVSLSDV QLSTQSSAPL  480
SSSRSTRQGG EVRRSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.10.0C3H family protein