PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON96628.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | C3H | ||||||||
Protein Properties | Length: 496aa MW: 53160.8 Da PI: 8.5783 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.5e-11 | 53 | 79 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG rC+++H++ PON96628.1 53 PGVPNCVYYMRTGYCGYGIRCRYNHPR 79 5789*********************96 PP | |||||||
2 | zf-CCCH | 40 | 6.6e-13 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ PON96628.1 100 EPVCQYYLKTGTCKFGASCKFHHPK 124 789********************96 PP | |||||||
3 | zf-CCCH | 38.8 | 1.6e-12 | 144 | 170 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG+Ck+G +CkF H++ PON96628.1 144 PGEAECSYYLKTGQCKFGVTCKFDHPQ 170 5789*********************97 PP | |||||||
4 | zf-CCCH | 36.1 | 1.1e-11 | 326 | 352 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+G++C+++H++ PON96628.1 326 PGEPDCQYYLKTGDCKFGSSCRYHHPR 352 5789*********************96 PP | |||||||
5 | zf-CCCH | 35.5 | 1.6e-11 | 373 | 398 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G+Ck+G++CkF H++ PON96628.1 373 GVQPCTFYLQNGHCKFGASCKFDHPM 398 5689********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence |
MALYGRSPAR NGSNPGHQQE WSPDGGETGL EESMWHLGLT SGGGGGESYP ERPGVPNCVY 60 YMRTGYCGYG IRCRYNHPRD RAAVAAAVRA TGEYPERVGE PVCQYYLKTG TCKFGASCKF 120 HHPKHGGGSL SQAPLNFYGY PLRPGEAECS YYLKTGQCKF GVTCKFDHPQ PAGTSVTASA 180 PQFYPPVQSP SVPMPDQFVG PSTSLRVARP PLLPGSYVQG AYGPVLFPPG VVPMPGWTPY 240 SIFRVDDTLT VSIAIPEWYM RFSPDTAPVS PVLSPGAQPT VGAASMYGVT HLPSSTAALA 300 RPYSSLPSSI GASSSSPKEQ AFPERPGEPD CQYYLKTGDC KFGSSCRYHH PRDRVVPRTN 360 CLLSPMGFPL RQGVQPCTFY LQNGHCKFGA SCKFDHPMGT MRYSPSASSL IDMPVTPYPV 420 GSLLATLAPS STSSDLRPDY SSRMPSSGNT STSSVGLIFS QTVPVSLSDV QLSTQSSAPL 480 SSSRSTRQGG EVRRSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 0.0 | C3H family protein |