PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96618.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 604aa MW: 65707 Da PI: 9.2343

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PON96618.1 104 FVCEICNKGFQRDQNLQLHRRGH 126 89*******************88 PP
2	zf-C2H2	15.3	5.7e-05	180	202	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ PON96618.1 180 WKCDKCSKKYAVQSDWKAHQKTC 202 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MSNITGEEAG SFSSGDQEVV QEHKQKQLQN HHFHGSNSGI PSGTASTNSN DSSSQQQQQP 60 APKKKRNLPG TPGNIRSLLI RSWSYPNAEV VALSPTTLMA TNRFVCEICN KGFQRDQNLQ 120 LHRRGHNLPW KLRQRTTTEV KKRVYICPEP SCVHHNPARA LGDLTGIKKH FSRKHGEKKW 180 KCDKCSKKYA VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LAEENNKVNQ 240 GLMNNNNMGP NLSQAQMPDL MPSMPLSNTT SINGLSDFKS VPQELIPMPF KSINNMAAGG 300 MFSSSSGPLF GSPRGISSPS ASSLQLSSNS SSGFNYLQDT KNGSSPVPTA GSAHMSATAL 360 LQKAAQMGAT ASNNSINSPM MQKGFVTSMA GPHNNHHDQL SPVKQAQSTY SGVMQLHNNP 420 PYEHHFQSQP SDQSNMVGIN SGGAFNNNTT STNPMLTNKS QQEIAQLFDS NGHDMGMYSQ 480 MFINGSGSIL EQEDSSTNSG SIHGKIAMER STTGLSRFAG SGGSSGGGGG GGGGDRIVVD 540 FMGIGESRPG SGMHEQQQQR LEEHHQLEAM RQNRLPQIMN NHPFQQQVSH GDSGIEKSSI 600 WRDI

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MSNITGEEAG SFSSGDQEVV QEHKQKQLQN HHFHGSNSGI PSGTASTNSN DSSSQQQQQP  60
APKKKRNLPG TPGNIRSLLI RSWSYPNAEV VALSPTTLMA TNRFVCEICN KGFQRDQNLQ  120
LHRRGHNLPW KLRQRTTTEV KKRVYICPEP SCVHHNPARA LGDLTGIKKH FSRKHGEKKW  180
KCDKCSKKYA VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LAEENNKVNQ  240
GLMNNNNMGP NLSQAQMPDL MPSMPLSNTT SINGLSDFKS VPQELIPMPF KSINNMAAGG  300
MFSSSSGPLF GSPRGISSPS ASSLQLSSNS SSGFNYLQDT KNGSSPVPTA GSAHMSATAL  360
LQKAAQMGAT ASNNSINSPM MQKGFVTSMA GPHNNHHDQL SPVKQAQSTY SGVMQLHNNP  420
PYEHHFQSQP SDQSNMVGIN SGGAFNNNTT STNPMLTNKS QQEIAQLFDS NGHDMGMYSQ  480
MFINGSGSIL EQEDSSTNSG SIHGKIAMER STTGLSRFAG SGGSSGGGGG GGGGDRIVVD  540
FMGIGESRPG SGMHEQQQQR LEEHHQLEAM RQNRLPQIMN NHPFQQQVSH GDSGIEKSSI  600
WRDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-92	C2H2 family protein