PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96157.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 568aa MW: 59972.8 Da PI: 9.0814

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96157.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PON96157.1 74 FICEICNKGFQRDQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	12.5	0.00043	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ PON96157.1 150 WKCDKCSKRYAVQSDWKAHSKTC 172 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MSNLTSASGE ASVSSSGNRA ETGTNNNFPQ QYFASPAPQS QPAAKKKRNL PGNPDPDAEV 60 IALSPKTLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV KKKVYVCPEA 120 SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD 180 CGTLFSRRDS FITHRAFCDA LAEESARSAI NGGVGVGVGV GVGPNPLGSS SSSTILSHLN 240 LQTQLMNANP QDLHSFSLKK EQQSFTPTSG LIRPDFPPWL SGPTQIHDLS SSSSVFSTRL 300 DQDFSQQENI TLLHGATPNP NPNLGGGGGG GGGSGGSALP PYQPPPSAHM SATALLQKAA 360 QMGATMSSAA ASSPAMMMRP HQAHHQSAAA DSGATAAAAT TSSTAIGNFG LNLSSSRGHH 420 QNQQDQTAPI AQGFGFGNKA STGTSNTSTP PPPPLLHHDM MCDTDTIEDP FKGVILSCKK 480 DGNSLNLDAF TRTTAIAAAA AAAAAQLNKS TDDSGGGGGG GNINGEGLTR DFLGLRPLSH 540 SEILNMAGLG NTINISRDHQ SNQPHKPW

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MSNLTSASGE ASVSSSGNRA ETGTNNNFPQ QYFASPAPQS QPAAKKKRNL PGNPDPDAEV  60
IALSPKTLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV KKKVYVCPEA  120
SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRRDS FITHRAFCDA LAEESARSAI NGGVGVGVGV GVGPNPLGSS SSSTILSHLN  240
LQTQLMNANP QDLHSFSLKK EQQSFTPTSG LIRPDFPPWL SGPTQIHDLS SSSSVFSTRL  300
DQDFSQQENI TLLHGATPNP NPNLGGGGGG GGGSGGSALP PYQPPPSAHM SATALLQKAA  360
QMGATMSSAA ASSPAMMMRP HQAHHQSAAA DSGATAAAAT TSSTAIGNFG LNLSSSRGHH  420
QNQQDQTAPI AQGFGFGNKA STGTSNTSTP PPPPLLHHDM MCDTDTIEDP FKGVILSCKK  480
DGNSLNLDAF TRTTAIAAAA AAAAAQLNKS TDDSGGGGGG GNINGEGLTR DFLGLRPLSH  540
SEILNMAGLG NTINISRDHQ SNQPHKPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	C2H2 family protein