PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96020.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 512aa MW: 55737.6 Da PI: 8.723

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PON96020.1 83 FICEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	11.8	0.00073	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + PON96020.1 160 WKCDKCSKRYAVQSDWKAHSKIC 182 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MMKGLMVDDN MSNLTFASGE ISASSSTRND QSVGNLYPQN SSASTNQLPP PPNKKKRSLP 60 GNPDPDAEVI ALSPKTLLAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVI 120 RKKVYVCPEA SCVHHDPSRA LGDLTGIKKH FFRKHGEKKW KCDKCSKRYA VQSDWKAHSK 180 ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESSSTST TTARAMTAIM NPLQHQHQHH 240 HHHLSSSSSQ QLVLPQHIEH HLHGGGAAIK REVVQDLIPP WLACPPPQPP PPPSLQPPQP 300 LMQFSSPNNP TSTLLNIQAQ PPPPPPPPQA AASPFASATA LLQKAAQMGS TMSNRAASFL 360 KAQQAHQAHH YLASESNNNN NMGTASGVVS GLGLSCENIA HEHDHDHDQF RFGNDYEEMM 420 SSLSAAVAPP MPPPPPAAGI NAATPSGCSS GVGMGVGGGH GGGNDGLTRD FLGLRTFPHR 480 DIFNIVGLDH INSSAYGSDH PKHDHHQPPW QG

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MMKGLMVDDN MSNLTFASGE ISASSSTRND QSVGNLYPQN SSASTNQLPP PPNKKKRSLP  60
GNPDPDAEVI ALSPKTLLAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVI  120
RKKVYVCPEA SCVHHDPSRA LGDLTGIKKH FFRKHGEKKW KCDKCSKRYA VQSDWKAHSK  180
ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESSSTST TTARAMTAIM NPLQHQHQHH  240
HHHLSSSSSQ QLVLPQHIEH HLHGGGAAIK REVVQDLIPP WLACPPPQPP PPPSLQPPQP  300
LMQFSSPNNP TSTLLNIQAQ PPPPPPPPQA AASPFASATA LLQKAAQMGS TMSNRAASFL  360
KAQQAHQAHH YLASESNNNN NMGTASGVVS GLGLSCENIA HEHDHDHDQF RFGNDYEEMM  420
SSLSAAVAPP MPPPPPAAGI NAATPSGCSS GVGMGVGGGH GGGNDGLTRD FLGLRTFPHR  480
DIFNIVGLDH INSSAYGSDH PKHDHHQPPW QG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	123	KLKQRSNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-113	C2H2 family protein