PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON95895.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

AP2

Protein Properties

Length: 411aa MW: 46449.3 Da PI: 6.6408

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON95895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.2	3.6e-12	74	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g PON95895.1 74 SKYRGVSRHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 130 89*****************88887784446666.9*****************98 PP
2	AP2	52.3	1.4e-16	173	224	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g PON95895.1 173 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 224 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MELMMVKNED QNSSTRRRRL NMADGDAQSA IRCVKRRRRD IPTEVSCDDN KQSTQQQAQA 60 DDQTSPATTV KRSSKYRGVS RHRWTGRYEA HLWDKLSWNV TQKKKGKQGA YDEEESAARA 120 YDLAALKYWG TSTFTNFPIS DYEKEIEIMQ TVTKEEYLAS LRRKSSGFSR GVSKYRGVAR 180 HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI EYRGINAVTN FDLSTYIRWL 240 KPEAAGNLVT GLESLPEVVT EPQTLRSTTN YGAPTDQDQF SNPNPFITSD NDYLNKYSPT 300 PPKQQVVFQS KSPLIGSSTG SKSSSPTALG LLLRSSIFRE LMEKNSNVSE VETDGDEPKN 360 QSQGGCSDDD EYGGFFFDGI TDIPFVCGSN RSDSIQLEEE KELHFVLSDH S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MELMMVKNED QNSSTRRRRL NMADGDAQSA IRCVKRRRRD IPTEVSCDDN KQSTQQQAQA  60
DDQTSPATTV KRSSKYRGVS RHRWTGRYEA HLWDKLSWNV TQKKKGKQGA YDEEESAARA  120
YDLAALKYWG TSTFTNFPIS DYEKEIEIMQ TVTKEEYLAS LRRKSSGFSR GVSKYRGVAR  180
HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI EYRGINAVTN FDLSTYIRWL  240
KPEAAGNLVT GLESLPEVVT EPQTLRSTTN YGAPTDQDQF SNPNPFITSD NDYLNKYSPT  300
PPKQQVVFQS KSPLIGSSTG SKSSSPTALG LLLRSSIFRE LMEKNSNVSE VETDGDEPKN  360
QSQGGCSDDD EYGGFFFDGI TDIPFVCGSN RSDSIQLEEE KELHFVLSDH S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	38	RRRRLNMADGDAQSAIRCVKRRR
2	17	39	RRRRLNMADGDAQSAIRCVKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-89	AP2 family protein