PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON94976.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 502aa MW: 55118.8 Da PI: 9.0793

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON94976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PON94976.1 89 FVCEICNKGFQRDQNLQLHRRGH 111 89*******************88 PP
2	zf-C2H2	12.2	0.00057	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ PON94976.1 165 WKCEKCSKIYAVQSDWKAHSKTC 187 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MSNSTSNLSE EASVSSGNRV HDFGGIFIHN NNPVLVSTFS DHNNHSNIND PHDQQPQKIK 60 KKRSLPGNPD PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 NSKEIKKRAY VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW 180 KAHSKTCGTR EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSAAGANP AVSIQPLFPF 240 STVHHHHNFA NPPPPIHIWD PPPPPPPSHH NPNPSTTPHH HHQPPPLLHV IKPEAHHFAA 300 QAPPPPLIFQ DPPPPQPRAE AEPRKGLIAS PFQALHVSSQ NAATSPHLSA TALLQKAATV 360 GAVATGPAHH QGQYSQSVGH VTDFGRPVGR HVMNNDQFLL GRTGLTPGDL ATWRKSDRLT 420 RDFLGLTADG NSSDNNTIGR GDHGRSNLGN GAVNVSVNVK DMLTYAGGVE FVGPCDQRDH 480 NSLLKPQVFG FAEAASQAWA DC

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MSNSTSNLSE EASVSSGNRV HDFGGIFIHN NNPVLVSTFS DHNNHSNIND PHDQQPQKIK  60
KKRSLPGNPD PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  120
NSKEIKKRAY VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW  180
KAHSKTCGTR EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSAAGANP AVSIQPLFPF  240
STVHHHHNFA NPPPPIHIWD PPPPPPPSHH NPNPSTTPHH HHQPPPLLHV IKPEAHHFAA  300
QAPPPPLIFQ DPPPPQPRAE AEPRKGLIAS PFQALHVSSQ NAATSPHLSA TALLQKAATV  360
GAVATGPAHH QGQYSQSVGH VTDFGRPVGR HVMNNDQFLL GRTGLTPGDL ATWRKSDRLT  420
RDFLGLTADG NSSDNNTIGR GDHGRSNLGN GAVNVSVNVK DMLTYAGGVE FVGPCDQRDH  480
NSLLKPQVFG FAEAASQAWA DC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-105	C2H2 family protein