PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON94499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | LBD | ||||||||
Protein Properties | Length: 261aa MW: 28045.7 Da PI: 8.1674 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.8 | 2.5e-26 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lrr+C ++C ++p++ p++q++++ +++k++G++ +++l++a p + r+++++sl+ eA+ r+ +Pv G++g++++++++l+++++e+ PON94499.1 4 SCNGCRILRRGCGQSCSIRPCLewiksPQSQSNATLFLAKFYGRAGLINLINAGPFHLRPEIFKSLLHEACGRIVNPVCGSAGLVSSGSWHLCEAAVEA 102 6*************************************************************************************************9 PP DUF260 95 allkee 100 +l++e+ PON94499.1 103 VLRGEP 108 988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MRLSCNGCRI LRRGCGQSCS IRPCLEWIKS PQSQSNATLF LAKFYGRAGL INLINAGPFH 60 LRPEIFKSLL HEACGRIVNP VCGSAGLVSS GSWHLCEAAV EAVLRGEPIT PVSDELAASR 120 VSGTVSSHGQ LRACDIRHVA KGESSAGCDR LIRKVQSRSR FKRSGNKRKN KVDFESETEF 180 GTESAQLVLS GPPASHDSEG TRRLSRGADS GEVDSGSVEP KPGDRVGPSG LDLELSLGFA 240 MWNSDKIDRC DDATCPVDIG Y |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-66 | LBD family protein |