PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON94232.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 414aa MW: 47043.1 Da PI: 6.5951

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON94232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	154	177	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H PON94232.1 154 YVCGVCGRKCKTNLDLKKHFKQlH 177 9******************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MNPICNASSS ATLQPLPSLF FRHSKQLHGT LPLKSKPPPR PTLRFKWPVP IRACAAASEI 60 DMVKTKQGVY APKQKKVVIL WDLDNKPPRG PPYQAAMALK RVAQRFGDVV DASAYANRHA 120 FVHLPQWVLE QRRDRKQLDI LERKGLVTPP SETYVCGVCG RKCKTNLDLK KHFKQLHERE 180 RQKKLNRMRS LKGKKRQRFK ERHIAGNHKY NEAARSLITP KVGYGLASEL RRAGVFVKTV 240 EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLR RAREANLGTV VVGDWDKALG 300 QHADVWVPWI GVENGEISEK DLVPKSSEVF DDHGLFSSGD FDEGVEIDSR LDSVVDELVV 360 RSSRFNGVRV SAFSEGEEEE DDWVGEAMGE DYLMEDSDDD DDDDEDSEDE DGIF

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MNPICNASSS ATLQPLPSLF FRHSKQLHGT LPLKSKPPPR PTLRFKWPVP IRACAAASEI  60
DMVKTKQGVY APKQKKVVIL WDLDNKPPRG PPYQAAMALK RVAQRFGDVV DASAYANRHA  120
FVHLPQWVLE QRRDRKQLDI LERKGLVTPP SETYVCGVCG RKCKTNLDLK KHFKQLHERE  180
RQKKLNRMRS LKGKKRQRFK ERHIAGNHKY NEAARSLITP KVGYGLASEL RRAGVFVKTV  240
EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLR RAREANLGTV VVGDWDKALG  300
QHADVWVPWI GVENGEISEK DLVPKSSEVF DDHGLFSSGD FDEGVEIDSR LDSVVDELVV  360
RSSRFNGVRV SAFSEGEEEE DDWVGEAMGE DYLMEDSDDD DDDDEDSEDE DGIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	174	RRDRKQLDILERKGLVTPPSETYVCGVCGRKCKTNLDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-167	C2H2 family protein