PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93879.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 415aa MW: 45035.2 Da PI: 9.4969

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	168	190	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H PON93879.1 168 ACSQCGEVFPKIESLELHQAVrH 190 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MALLTFAPEP TEPKKPHPQS KRKRPKQAKQ QKPPSSWDQI KNLLTCKQIE GSRVHDPSKN 60 GAVGYSKLGS SCGSICSFRD VVHGNTRVVH RADNSPESST VGQETGLLTR KAVNGSTARS 120 TSARSNGGAA YTSSSRGMQF RKLSGCYECH MIVDPSRYPI IPRSTICACS QCGEVFPKIE 180 SLELHQAVRH AVSELGPEDS GRNIVEIIFK SSWLKKDNPI FKIERILKVH NTQRTIQRFE 240 DCRDAVKARA LNSTRKNPRC AADGNELLRF HCTTLTCALG ARGASSLCGS VPGCGVCTII 300 RHGFQGSKSG QAQGQTQGCE PGKGVWTTAS SGRAHDSLRC TDGRRAMLVC RVIAGRVKRI 360 ADDAAAEEDS VSLGSPYDSV AGYAGIYSNL EELIVFNPKA ILPCFVVIYK PLESQ

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MALLTFAPEP TEPKKPHPQS KRKRPKQAKQ QKPPSSWDQI KNLLTCKQIE GSRVHDPSKN  60
GAVGYSKLGS SCGSICSFRD VVHGNTRVVH RADNSPESST VGQETGLLTR KAVNGSTARS  120
TSARSNGGAA YTSSSRGMQF RKLSGCYECH MIVDPSRYPI IPRSTICACS QCGEVFPKIE  180
SLELHQAVRH AVSELGPEDS GRNIVEIIFK SSWLKKDNPI FKIERILKVH NTQRTIQRFE  240
DCRDAVKARA LNSTRKNPRC AADGNELLRF HCTTLTCALG ARGASSLCGS VPGCGVCTII  300
RHGFQGSKSG QAQGQTQGCE PGKGVWTTAS SGRAHDSLRC TDGRRAMLVC RVIAGRVKRI  360
ADDAAAEEDS VSLGSPYDSV AGYAGIYSNL EELIVFNPKA ILPCFVVIYK PLESQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2 family protein