PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON93852.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family BBR-BPC
Protein Properties Length: 337aa    MW: 37556.5 Da    PI: 10.0319
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON93852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind388.88.2e-11913371301
   GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92 
                 mdd g+re  r+kg +y+ +  + + +++   +q+m ++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+a++erdn++++l+++ensl+
  PON93852.1   1 MDDGGHREngRHKGdQYKTTqgQWMMQHQpsMKQIMGIMAERDAAIQERNLALSEKKAALAERDMAFLQRDAAIAERNNAILERDNAIATLQYRENSLS 99 
                 9*****999********9444444444432146****************************************************************99 PP

   GAGA_bind  93 ....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
                     sa+p+g+q+++g+k++++    +++ +++++ ++  re++++++lp+  +a+++ +++      r+k++ke+k  +++k+ +k+ +k k+es+d 
  PON93852.1 100 ngnmSACPPGCQISRGVKHVHHPLPhVHHlQHMNEASYSSREMNTSDSLPMPAEAPDTAKSR------RGKRTKEPKPISPNKRASKPPRKIKRESEDL 192
                 99999****************976636667899999************99888777666554......5556777777777777777777777777774 PP

   GAGA_bind 186 r.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRi 255
                 +                             sk+++k +dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP ++++r+aR+
  PON93852.1 193 NkiafgksqewksgqsmvgggddlnkqlvvSKSDWKGQDLGLNQVTYDESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTMSMYPLPSVPNKRHARV 291
                 4477888889999************************************************************************************** PP

   GAGA_bind 256 agrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 +grKmS++af+klL++Laa+G+dlsnpvDLkd WAkHGtn+++ti+
  PON93852.1 292 GGRKMSGSAFNKLLNRLAADGHDLSNPVDLKDNWAKHGTNRYITIK 337
                 *********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MDDGGHRENG RHKGDQYKTT QGQWMMQHQP SMKQIMGIMA ERDAAIQERN LALSEKKAAL  60
AERDMAFLQR DAAIAERNNA ILERDNAIAT LQYRENSLSN GNMSACPPGC QISRGVKHVH  120
HPLPHVHHLQ HMNEASYSSR EMNTSDSLPM PAEAPDTAKS RRGKRTKEPK PISPNKRASK  180
PPRKIKRESE DLNKIAFGKS QEWKSGQSMV GGGDDLNKQL VVSKSDWKGQ DLGLNQVTYD  240
ESTMPAPVCS CTGVLRQCYK WGNGGWQSSC CTTTMSMYPL PSVPNKRHAR VGGRKMSGSA  300
FNKLLNRLAA DGHDLSNPVD LKDNWAKHGT NRYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-151BBR-BPC family protein