PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON93571.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 287aa    MW: 32173.6 Da    PI: 5.0457
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON93571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.31.2e-241054145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                kr e++snrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tgk
  PON93571.1 10 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIVLLMFSPTGK 54
                689*****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MMGRLKLKIK RLESTSNRQV TYSKRRNGIL KKAKELSILC DIDIVLLMFS PTGKPTLYQG  60
ERSNFDEVIT KFSQLTPQER TKRKLESLEA LKKTFKKLDH DVNIQDFLGS SSQTVEFQCE  120
MSLPLMVGGV QEAQPLPWIP NNENQPLMLP NEPNFLPHGE VQCAAEASLS GCSIYFTNGS  180
GKQMEVGDPG QRSNIEQGGC SLDELNRSAG LSLDFGEQYP YPCLPDDKNL KPDMEMNLQA  240
TPVDYQVNNN CELPPSFYDN PQHAWVSGFG PCGLALYNEN ACQQQLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-62M-type_MADS family protein