PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93562.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 371aa MW: 40932.5 Da PI: 7.1183

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.5e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+ +++q+G g+W+ +++ g+ R++k+c++rw +yl PON93562.1 16 RGPWTPEEDQKLLSYIQQHGHGSWRFLPQKAGLQRCGKSCRLRWTNYL 63 89********************************************97 PP
2	Myb_DNA-binding	52.7	1e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+ +++++++lG++ W++Ia +++ +Rt++++k++w+++l PON93562.1 69 RGKFTLQEERTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 114 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGRSPFCDNI ADGLKRGPWT PEEDQKLLSY IQQHGHGSWR FLPQKAGLQR CGKSCRLRWT 60 NYLRPDIKRG KFTLQEERTI IQLHALLGNR WSAIATHLPK RTDNEIKNYW NTHLKKRLTM 120 MGIDPVTHKP QRTTLGSVAA DPKDVSNLSH MAQWESTRLE AEARLVRESK LLRSQGGVNV 180 DESGSNGSSN NVATSSDEIL KKMPTTFAPP RCFDILKAWE SRLILSESAR GNDHDRTLKR 240 SVSTSSGGTN GGDHVLADSA SASFGSGGNS DVISYSTAPS SGANGGSPLG FDGIFDTWSG 300 ISGCDDFCSE EVLATRHLED NYDHRAPSDD HDIGKLIQSG GCDELYNEVN KNYWNDILNL 360 VNCGPSNLPV F

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGRSPFCDNI ADGLKRGPWT PEEDQKLLSY IQQHGHGSWR FLPQKAGLQR CGKSCRLRWT  60
NYLRPDIKRG KFTLQEERTI IQLHALLGNR WSAIATHLPK RTDNEIKNYW NTHLKKRLTM  120
MGIDPVTHKP QRTTLGSVAA DPKDVSNLSH MAQWESTRLE AEARLVRESK LLRSQGGVNV  180
DESGSNGSSN NVATSSDEIL KKMPTTFAPP RCFDILKAWE SRLILSESAR GNDHDRTLKR  240
SVSTSSGGTN GGDHVLADSA SASFGSGGNS DVISYSTAPS SGANGGSPLG FDGIFDTWSG  300
ISGCDDFCSE EVLATRHLED NYDHRAPSDD HDIGKLIQSG GCDELYNEVN KNYWNDILNL  360
VNCGPSNLPV F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.2	4e-98	MYB family protein