PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93478.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 749aa MW: 83317.9 Da PI: 5.555

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.5e-08	128	150	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C GdrC F Hgp PON93478.1 128 VPCIFFQK-GYCIKGDRCAFLHGP 150 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MVAGTQQQPQ QLQQLTQPPQ QHQLPVSAEE EALKRNTDCV YFLASPLTCK KGSECEYRHS 60 EYARVNPRDC WYWLNGNCLN PKCSFRHPPL DGLLGTQAAP SVGSGLPSSQ TAAASVPAAT 120 QNSGKQAVPC IFFQKGYCIK GDRCAFLHGP NPTTSIKVTQ PSAPTHASEP SNVKKAFGGL 180 QKCTQEQRIP QANISKLVGV LPEANPAPKV ETAPPRNGVR IERSVQSIKA FNDESLKGNT 240 VNASVINGNL TSRSSRSHVV NVSDDHSFQN GKDADEFLRE SSPGFDVLVD DELRDPEYLH 300 GEDQYGRGRG HDGRNLNSVD EYDMDKSADY GSAADIDREH FRDPRGYESY DHMQGQYAWD 360 QHRASSERMV VGPAHFDRRG YRKSHSPENV NESDLRHRLS KQRRVNGLRS VISHDYAVNN 420 HVDDRNYRGS SRRDPHQISQ HEGALSGRLR GRIKLPGGPS SVNGGDLPLD REFDRGRNRG 480 RLSPSRPQIS THQGRFRDRL KGKAQEDYSN QERNFRVLRT RRDVMDDDSV EFAAPKPLSE 540 LKLGRVTENK EQSHSNLGKR KITRLEVSQQ SEDDLSFEGP KSLSEILKRK RAAESAAFGS 600 GKSGHEEDNN QRENRESIQG GSKTTAVTDM LHGRSTVSKQ GNNVSSSKGE SKSATAEEVE 660 IEGNKIEGSL APSEAPNMND FEVEDGMIYD ETADDQELEA EDQAHGEYDY EQGEEEGEYD 720 GENAEAEEEY LEDEDGDDDF AKKIGVMFS

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MVAGTQQQPQ QLQQLTQPPQ QHQLPVSAEE EALKRNTDCV YFLASPLTCK KGSECEYRHS  60
EYARVNPRDC WYWLNGNCLN PKCSFRHPPL DGLLGTQAAP SVGSGLPSSQ TAAASVPAAT  120
QNSGKQAVPC IFFQKGYCIK GDRCAFLHGP NPTTSIKVTQ PSAPTHASEP SNVKKAFGGL  180
QKCTQEQRIP QANISKLVGV LPEANPAPKV ETAPPRNGVR IERSVQSIKA FNDESLKGNT  240
VNASVINGNL TSRSSRSHVV NVSDDHSFQN GKDADEFLRE SSPGFDVLVD DELRDPEYLH  300
GEDQYGRGRG HDGRNLNSVD EYDMDKSADY GSAADIDREH FRDPRGYESY DHMQGQYAWD  360
QHRASSERMV VGPAHFDRRG YRKSHSPENV NESDLRHRLS KQRRVNGLRS VISHDYAVNN  420
HVDDRNYRGS SRRDPHQISQ HEGALSGRLR GRIKLPGGPS SVNGGDLPLD REFDRGRNRG  480
RLSPSRPQIS THQGRFRDRL KGKAQEDYSN QERNFRVLRT RRDVMDDDSV EFAAPKPLSE  540
LKLGRVTENK EQSHSNLGKR KITRLEVSQQ SEDDLSFEGP KSLSEILKRK RAAESAAFGS  600
GKSGHEEDNN QRENRESIQG GSKTTAVTDM LHGRSTVSKQ GNNVSSSKGE SKSATAEEVE  660
IEGNKIEGSL APSEAPNMND FEVEDGMIYD ETADDQELEA EDQAHGEYDY EQGEEEGEYD  720
GENAEAEEEY LEDEDGDDDF AKKIGVMFS