PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93468.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 562aa MW: 64049.9 Da PI: 9.0431

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.6	5e-09	528	550	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lCr++a+ G C yGd+CkF+H+ PON93468.1 528 QKLCRYYAQ-GRCYYGDNCKFSHD 550 579****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MEIDKDEEDF CETPEESESE YSSDDSDNDP SYSIIEETHA KFSKLSIKKK TKARMVDDHD 60 INLPGEAEND IVPPVLDEKD EKSFEEIQKV IGVSQLEKLK VDQCKVYLRK NGLRLTGNKG 120 TLLQRIKEHL EISNGGGEKK YPVSSFSLNC KGDACTGDVV LFEQKVYDMF NIASRSASGP 180 PCGTRIVAGR IVNESYGAAK QQHTFTIEVL WSKGEKPLPP LHPLLIKGRN LYRLKTLRQK 240 WENEEERQKI LLEKHSRGCL ARSDREARIR VKEKRKMLKE NRISVKEASK NQSQLNSTLV 300 TKPSVQPRNF VSSVNSENTE KQALGPQQSG FSADSGKPAT NAQESGLTAN FRKLASQPPA 360 QNRDSYVYCV KVKTPSPLVK DTTQDKYIDQ ASPNLAGSRS ITNSERLKSD IHELDPTTLS 420 DHRAPASTCS SMNWGEDLAN RATHRQPLTS MNNHLPMSPS RRQNGMNNYP PMIPSRKQNY 480 VDNYRPTSPS RRQNCVDNYR PMSPSCRHNY VDNHRPMSSL RRQNYMQQKL CRYYAQGRCY 540 YGDNCKFSHD MREECGQRRE ER

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MEIDKDEEDF CETPEESESE YSSDDSDNDP SYSIIEETHA KFSKLSIKKK TKARMVDDHD  60
INLPGEAEND IVPPVLDEKD EKSFEEIQKV IGVSQLEKLK VDQCKVYLRK NGLRLTGNKG  120
TLLQRIKEHL EISNGGGEKK YPVSSFSLNC KGDACTGDVV LFEQKVYDMF NIASRSASGP  180
PCGTRIVAGR IVNESYGAAK QQHTFTIEVL WSKGEKPLPP LHPLLIKGRN LYRLKTLRQK  240
WENEEERQKI LLEKHSRGCL ARSDREARIR VKEKRKMLKE NRISVKEASK NQSQLNSTLV  300
TKPSVQPRNF VSSVNSENTE KQALGPQQSG FSADSGKPAT NAQESGLTAN FRKLASQPPA  360
QNRDSYVYCV KVKTPSPLVK DTTQDKYIDQ ASPNLAGSRS ITNSERLKSD IHELDPTTLS  420
DHRAPASTCS SMNWGEDLAN RATHRQPLTS MNNHLPMSPS RRQNGMNNYP PMIPSRKQNY  480
VDNYRPTSPS RRQNCVDNYR PMSPSCRHNY VDNHRPMSSL RRQNYMQQKL CRYYAQGRCY  540
YGDNCKFSHD MREECGQRRE ER