PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON93001.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 776aa    MW: 84142.9 Da    PI: 6.7393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON93001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.62.9e-1014167752374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  ++L+++Ae v +g+++ aq +Larl+++ sp g+p++R+a+yf+eAL+  l++   +   ++pp+  ++ +++ ++ a+k+fsevsP+++f ++t+Nq
  PON93001.1 416 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLHRAAFYFKEALNLLLLN---NSHTSVPPRCPTPFDVIFKMGAYKVFSEVSPLIQFVNFTCNQ 511
                 679**************************************************9...444557888888899*************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198
                 a+lea++ ++r+Hi+Dfdi+ G+QW++++q+L  R++gppsl+iT+++sp++++  el  ++++La+fA+e+gvpfe +v+  ++le+ ++++  ++  
  PON93001.1 512 ALLEALDDADRIHIVDFDIGFGAQWASFMQELPVRNRGPPSLKITAFASPSTHHPVELTLMRDNLAQFANEIGVPFELEVVNFDSLEQTSYSMPIFRAe 610
                 *********************************************************************************999999999988666656 PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                  E++ Vn+ +   +  +++++l+s    +L++vk+lsPkvvv  ++ +d+++ +F +++l+al+ y  l++sl+a    +s++ +k+E++ll+++i++ 
  PON93001.1 611 SEVVGVNFPI--WSSSNQPAALPS----LLRFVKQLSPKVVVSLDRGCDRSDLPFPQHILQALHSYINLLESLDAV-NVASDAVNKIEKFLLQPKIEST 702
                 8888898888..566667888888....*********************************************665.56999***************** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 v  + ++      ++  W+  + +aG++pv++s+++++qa++++++++++g+++e++++slvl+W++r+L+svSaWr
  PON93001.1 703 VLGRLRA----PDKMPLWKTVFASAGLTPVTFSNFTETQAECVVKRTPVRGFHIEKRQASLVLCWQRRELISVSAWR 775
                 **99998....999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    
MRRSPSPPTS AASTLSSSFG GGGGGGAGGG GGGGGGGCGS IDNTGGVATL PPEPPAAAPT  60
TEPTGTARKD EWASELQPIP AGVLEAVTTG SGGERCGLVG LEDWENMLSE TAAASSPGQD  120
HSLLRWIAGD MEDPSFGLKQ LLQSGNTLLE FDGNAGLGMV DQGPGFDHIG GVSVSGTGSL  180
MAGINPSLAF SGSGFTNNNN NDGNNGGGKI GSIAPTSSSG ALNYKITNCH MQNLILSNSA  240
SSLPLPVSLP PGVIYQPPQQ QQQHFEGPDE KPQILNPQAL MNQQQATQFS QNPNFFLPLE  300
QHLLQPQSKR HNSGSVDPNS QIPKVVPFCD PGHEFLLRKQ HHHHQQQQQQ HLGFPQGMQF  360
LPQQKPLMVP KQMQKVVVGP AEEMAHHHHN HNHNQNHHHQ QQQQQQQLQQ HQHALLDQLY  420
KAAELVGTGN FSHAQGILAR LNHQLSPVGK PLHRAAFYFK EALNLLLLNN SHTSVPPRCP  480
TPFDVIFKMG AYKVFSEVSP LIQFVNFTCN QALLEALDDA DRIHIVDFDI GFGAQWASFM  540
QELPVRNRGP PSLKITAFAS PSTHHPVELT LMRDNLAQFA NEIGVPFELE VVNFDSLEQT  600
SYSMPIFRAE SEVVGVNFPI WSSSNQPAAL PSLLRFVKQL SPKVVVSLDR GCDRSDLPFP  660
QHILQALHSY INLLESLDAV NVASDAVNKI EKFLLQPKIE STVLGRLRAP DKMPLWKTVF  720
ASAGLTPVTF SNFTETQAEC VVKRTPVRGF HIEKRQASLV LCWQRRELIS VSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-123GRAS family protein