PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON92386.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 380aa MW: 42644.8 Da PI: 7.1406

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON92386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l+d++k+ G g+W+t ++ g++R++k+c++rw +yl PON92386.1 14 KGPWTPEEDQALIDYIKKNGHGRWRTLPKNAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.4	5.9e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ PON92386.1 67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MGKTPCCEKN GLQKGPWTPE EDQALIDYIK KNGHGRWRTL PKNAGLKRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLKMG 120 IDPVTHTPRL DLLELSSLLN STLYNPQALS YLINNPNNYN MLGNMGPLPL VNQNLLNLAS 180 ALFASNQPKI NNPQNVQENQ LNNIPQNDQF QYSQLPFLNE AQLFMEPKME QLSQTHESLD 240 HSLNQALNVT GVESTTSTFV PMGVSNGFNH HDISAQSSSS SMVNSSLAES HQAGFVYSGN 300 NIIGQTQNNM MHMMNPNVSF SSLLSTPSSY ASSPNTYNVN SSSTTTTTTT THEDERDSFC 360 SNIFMYHDIA NALNGNELIM

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MGKTPCCEKN GLQKGPWTPE EDQALIDYIK KNGHGRWRTL PKNAGLKRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLKMG  120
IDPVTHTPRL DLLELSSLLN STLYNPQALS YLINNPNNYN MLGNMGPLPL VNQNLLNLAS  180
ALFASNQPKI NNPQNVQENQ LNNIPQNDQF QYSQLPFLNE AQLFMEPKME QLSQTHESLD  240
HSLNQALNVT GVESTTSTFV PMGVSNGFNH HDISAQSSSS SMVNSSLAES HQAGFVYSGN  300
NIIGQTQNNM MHMMNPNVSF SSLLSTPSSY ASSPNTYNVN SSSTTTTTTT THEDERDSFC  360
SNIFMYHDIA NALNGNELIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	6e-86	MYB family protein