PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON92288.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

RAV

Protein Properties

Length: 349aa MW: 39337.2 Da PI: 6.2006

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON92288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	29.8	1.5e-09	46	91	3	54
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ykG + ++g W A+I+ + +r++lg+f +eeAa a++ a+ +l+ PON92288.1 46 YKGTV-RQQNGHWGAQIYA------NhQRIWLGTFKLEEEAAMAYDSAAIRLR 91 56643.445899**999......44**********************98 PP
2	B3	89.9	2e-28	169	267	1	87
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a ++ gg+ ++++++ d+ rsW+++++y+++s+++v+t+GW++Fvk++gLk++D++ F+l PON92288.1 169 FQKELTPSDVGKLNRLVIPKKYAVKYlpriseekseegieGGV--DDVEVVFHDRLMRSWKFRYCYWRSSQSFVFTRGWSRFVKEKGLKANDTIAFYLC 265 99************************999866665554333..889***********************************************87 PP SS CS B3 86 gr 87 ++ PON92288.1 266 EQ 267 54 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MEEEMSSIVI NGAANGIQEA ADSNGSVHSL PPPSKRARTG SSSAKYKGTV RQQNGHWGAQ 60 IYANHQRIWL GTFKLEEEAA MAYDSAAIRL RSGDSHRNFP WTKATAEEPK FQDTYSTENL 120 LNMIKDGSYQ AKFEDFLKNT CTENLANEAS LGLGTRVNKD GVLFKQLLFQ KELTPSDVGK 180 LNRLVIPKKY AVKYLPRISE EKSEEGIEGG VDDVEVVFHD RLMRSWKFRY CYWRSSQSFV 240 FTRGWSRFVK EKGLKANDTI AFYLCEQREA QDEKEARVFA VIDVVEDKGG LLVEGAKQSC 300 LGLHVNKEYQ KEVEADREEG EIMEEAAAHP IPSKAENSGF RLFGVQIVV

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MEEEMSSIVI NGAANGIQEA ADSNGSVHSL PPPSKRARTG SSSAKYKGTV RQQNGHWGAQ  60
IYANHQRIWL GTFKLEEEAA MAYDSAAIRL RSGDSHRNFP WTKATAEEPK FQDTYSTENL  120
LNMIKDGSYQ AKFEDFLKNT CTENLANEAS LGLGTRVNKD GVLFKQLLFQ KELTPSDVGK  180
LNRLVIPKKY AVKYLPRISE EKSEEGIEGG VDDVEVVFHD RLMRSWKFRY CYWRSSQSFV  240
FTRGWSRFVK EKGLKANDTI AFYLCEQREA QDEKEARVFA VIDVVEDKGG LLVEGAKQSC  300
LGLHVNKEYQ KEVEADREEG EIMEEAAAHP IPSKAENSGF RLFGVQIVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-95	RAV family protein