PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON92007.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 474aa MW: 53690.1 Da PI: 9.5434

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON92007.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.4e-18	54	100	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l +av+++ g++Wk+Ia+++ gR + qc +rwqk+l PON92007.1 54 KGGWTEEEDKILEHAVRKYNGKNWKKIAECIS-GRNDVQCLHRWQKVL 100 688***************************.**********986 PP
2	Myb_DNA-binding	59.8	5.8e-19	106	152	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+l+++ v+++G+g W+ Ia++++ gR +kqc++rw+++l PON92007.1 106 KGAWTKEEDDLIIEKVREFGTGKWSQIAKYLP-GRIGKQCRERWHNHL 152 79****************************.***********97 PP
3	Myb_DNA-binding	53.2	6.9e-17	158	200	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+eE++ l+++ + +G++ W+ Ia+ ++ gRt++++k++w+ PON92007.1 158 RSPWTEEEELTLIQVQQSYGNK-WAEIAKILP-GRTENSIKNHWN 200 789*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MEEEATEHDT NVRNDMLVSY SSPSHSDGSH GNPVPHQASV QGRRTSGPIR RPQKGGWTEE 60 EDKILEHAVR KYNGKNWKKI AECISGRNDV QCLHRWQKVL NPDLIKGAWT KEEDDLIIEK 120 VREFGTGKWS QIAKYLPGRI GKQCRERWHN HLNPDIIRSP WTEEEELTLI QVQQSYGNKW 180 AEIAKILPGR TENSIKNHWN SSVKRKLTYQ TESDSDPRSR RLEMVRQNPV PDQEVCLARS 240 TETSIPDLNL EAPNETVSEM HYSPEENSLI QRETSRSTFQ DRGEQCKDTT SSIAMVRDSQ 300 HMSAKIGDKL CSTSGASSGV LQASLNSFQG SYQSLKRPHG NMSSINDLGK KISKLGRQSS 360 KTVLSRMTDE AHRRSRDVKA STSTENSNLS LLWYKPLQVE DLNRFLETGK ISSADSYIQT 420 TSTPVSSVTL LSHDKGISSN HSSCPIFVLR CRGRSFKNLP TIIRKRKAST FKAM

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MEEEATEHDT NVRNDMLVSY SSPSHSDGSH GNPVPHQASV QGRRTSGPIR RPQKGGWTEE  60
EDKILEHAVR KYNGKNWKKI AECISGRNDV QCLHRWQKVL NPDLIKGAWT KEEDDLIIEK  120
VREFGTGKWS QIAKYLPGRI GKQCRERWHN HLNPDIIRSP WTEEEELTLI QVQQSYGNKW  180
AEIAKILPGR TENSIKNHWN SSVKRKLTYQ TESDSDPRSR RLEMVRQNPV PDQEVCLARS  240
TETSIPDLNL EAPNETVSEM HYSPEENSLI QRETSRSTFQ DRGEQCKDTT SSIAMVRDSQ  300
HMSAKIGDKL CSTSGASSGV LQASLNSFQG SYQSLKRPHG NMSSINDLGK KISKLGRQSS  360
KTVLSRMTDE AHRRSRDVKA STSTENSNLS LLWYKPLQVE DLNRFLETGK ISSADSYIQT  420
TSTPVSSVTL LSHDKGISSN HSSCPIFVLR CRGRSFKNLP TIIRKRKAST FKAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	4e-80	MYB family protein