PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON91702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | C3H | ||||||||
Protein Properties | Length: 736aa MW: 79949.5 Da PI: 6.3102 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 308 | 328 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg PON91702.1 308 PCPEFRK-GACRRGDMCEYAHG 328 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 736 aa Download sequence |
MCCGSEKLKS ISSPTPSPIS FDESRVTNIA MNHLTVETED TFASLLELAA NNDIEGFKRS 60 IERDPSSIDE TGLWYGRQKG SKLMVNEQRT PLMVAATYGS IDVIKLILSL SAADVNRHCG 120 LDRSTALHCA ASGGAENAVD VVKLLMAAGA DPNLVDGNGQ SPVDAIVVPP KLQDVKLALE 180 ELLKTNGSAV ECFLTVSTRT LNSSSPTLSS SSENGSPLAQ DFVSSPSKLK YNDFPVSSLS 240 EKKEYPVDPS LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR 300 KFHYSCVPCP EFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC ARRVCFFAHT 360 PEELRPLYVS TGSAVPSPRT GTSGAAAMDF AAAMSMLPGS PSSMSVMSPS PFTPPISPSA 420 NGMSHSSMGW PQPNVPALHL PGSNLQSSRL RSSLNARDIP AEDFDLLPDF DVQQQQQLLN 480 ELSCLSQPSL SSNSLNRSGR LKTLTPSNLD DLFSAESSSP RYSDQALQSA VFSPTHKSAV 540 INQFQQQQSM LSPINTNFSP KNVEHPLLHQ ASFGVPSSGR MSPRNLEPIS PMGSRVSMLA 600 QREKQQQFRS LSSRELGSNS ASMVGSPVNS WSKWGSSNGK PDWAVSADEL GKLRRSSSFE 660 LGNNGEEPDL SWVQSLVKES PTEMKEKSTA PVSGVSASTS SSDGSNVNSQ MESVDHAVLG 720 AWLEQMQLDH LVAQQN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |