PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON90999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26267.9 Da PI: 10.1287 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.4 | 3.3e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krie +nrqvt+skRr+g++KKA ELS+LCd +v+++i+sstgkl+ey PON90999.1 9 KRIEKATNRQVTYSKRRKGLFKKADELSILCDSKVSLLILSSTGKLHEYV 58 79***********************************************7 PP | |||||||
2 | K-box | 82.4 | 1.1e-27 | 71 | 165 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq+++g +l++a++e++q++l+kLk+++++L+r++R++ Ge++++L++ eL L q++e +++ +R++K++++ +qi+++ kk k+++++n+aL PON90999.1 71 YQRTTGIDLWSAQYERMQENLKKLKEKNRSLRRQIRQRRGEGVDNLDFGELLALDQEMEAAVQLVRERKYKVMSNQIDTTNKKLKQAKQINRALL 165 78899999************************************************************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MARGKIQIKR IEKATNRQVT YSKRRKGLFK KADELSILCD SKVSLLILSS TGKLHEYVSP 60 STTTKQVIDQ YQRTTGIDLW SAQYERMQEN LKKLKEKNRS LRRQIRQRRG EGVDNLDFGE 120 LLALDQEMEA AVQLVRERKY KVMSNQIDTT NKKLKQAKQI NRALLTDGIK DDPDYGLVDA 180 GGDYDSVTGY SNGIPGVFAL RLQPNQPNLH NDAESVLTSC LSSNWRVEKF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 109 | LKKLKEKNRSLRRQIRQRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-76 | MIKC_MADS family protein |