PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON90823.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C2H2
Protein Properties Length: 254aa    MW: 28310.6 Da    PI: 4.8371
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON90823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-052345123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ Fs+   L  H++ H
  PON90823.1 23 YTCNFCKRGFSNAQALGGHMNIH 45
                9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MEKFDPIKWG SEDQTGSGQA RSYTCNFCKR GFSNAQALGG HMNIHRRDRA IIRQKFSDQE  60
SQQVNSSETN TSVPKNPPPD HDDDDTNNNN NNNIDVNNAL SSSAEDQRSS TTLISTSTTH  120
DQKRASNSSQ LEVLLTSSTE QQSGGVVVLN NNPYHVNSLK MMMRSEYDHH ADDHDEQYSV  180
AATARGKLVI GGAEEANAIR RQSPFFIKES VAEDGVVARR EQEEELDLEL RLGPERQEAV  240
TTTTTTTLST REFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.18e-17C2H2 family protein