PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON90248.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 544aa    MW: 61132.5 Da    PI: 6.3471
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON90248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.47.7e-1291735441374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L+ecA+avs++d ++a  l++ l +++s +g+p+qRl ay++e+L+arl +s+s++ykal++se    +sse l++++++++++P+ +f+++ aN
  PON90248.1 173 LKQVLVECARAVSESDITRAVDLMEVLGNMVSVSGEPIQRLGAYLLEGLRARLEKSGSSIYKALKCSEPI--TSSELLSYMSILYQICPFWRFAYISAN 269
                 5799***************************************************************998..699************************ PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                   I ea++ e+r+HiiDf+i qG QW+aL++ La Rp+gpp +RiTgv++++s   +   l  +g+rL+k Ae l+vpfef+  +a   ++++le+Lr+
  PON90248.1 270 VVIREAIQYEQRIHIIDFQIAQGSQWMALFEDLARRPGGPPFVRITGVDDSQSAfaRGGGLDLVGKRLSKQAELLNVPFEFHG-AAMCGSEVKLETLRI 367
                 **************************************************99989999*************************.899************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEa++Vn+ + lh++ desvs+e++rd++L+l+kslsPkv+++veqe+++n+++F++rf e+l+yy+a+f+s+++  pr++++ri+ E+++++r+iv
  PON90248.1 368 RPGEAIVVNCPYVLHHMADESVSTENHRDRLLRLIKSLSPKVMTLVEQESNTNTSPFFARFRETLDYYTAMFESIDVARPRDDKQRISAEQHCVARDIV 466
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg +r+erhe + kWr+rl++aG++p+pls+++++ ++ llr+++++ +r+ e +g+l+lgWk+r + + SaWr
  PON90248.1 467 NMIACEGPDRVERHELFTKWRARLMMAGLTPYPLSSSVTCAVNDLLREYNQN-FRIGEMNGALYLGWKNRLMATSSAWR 544
                 **************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MQTSQKHQRT GVIHGLYHQP MQEIDSYRMP HFQIVENNMF QDIGSQGKTV SFETCNGQFF  60
TLDSSPATTD FLTCDSPSAV SVLSNRSTFS PQGSHTCSSD PHHSPDIYSG SPISGCSVAD  120
DGSDLKHKLR EIEISLLGIE SEIVDSCYCC YKTEARQNTS MATWKMLDSK LDLKQVLVEC  180
ARAVSESDIT RAVDLMEVLG NMVSVSGEPI QRLGAYLLEG LRARLEKSGS SIYKALKCSE  240
PITSSELLSY MSILYQICPF WRFAYISANV VIREAIQYEQ RIHIIDFQIA QGSQWMALFE  300
DLARRPGGPP FVRITGVDDS QSAFARGGGL DLVGKRLSKQ AELLNVPFEF HGAAMCGSEV  360
KLETLRIRPG EAIVVNCPYV LHHMADESVS TENHRDRLLR LIKSLSPKVM TLVEQESNTN  420
TSPFFARFRE TLDYYTAMFE SIDVARPRDD KQRISAEQHC VARDIVNMIA CEGPDRVERH  480
ELFTKWRARL MMAGLTPYPL SSSVTCAVND LLREYNQNFR IGEMNGALYL GWKNRLMATS  540
SAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein