PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON90192.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 454aa MW: 49796.2 Da PI: 6.1067

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON90192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt+Ed++lv +++q G g W+t +++ g+ R++k+c++rw +yl PON90192.1 14 KGSWTTQEDQKLVAYITQNGEGGWRTLPQKAGLLRCGKSCRLRWTNYL 61 799***************************99**********97 PP
2	Myb_DNA-binding	50.3	5.6e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+e +++++ G++ W+tIa+ ++ +Rt++++k++w++ PON90192.1 67 RGNFSHEEEETIIKLHSVIGNK-WSTIAKQLP-RRTDNEIKNHWHT 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MGRAPCCNGQ GLKKGSWTTQ EDQKLVAYIT QNGEGGWRTL PQKAGLLRCG KSCRLRWTNY 60 LKPGIKRGNF SHEEEETIIK LHSVIGNKWS TIAKQLPRRT DNEIKNHWHT RLRRLVAEMG 120 IDHFLTSTNI ESHVAKHDIG INAATEESRK KKLKAIESEG SVSTSFHLLN EEASRFKASS 180 TPASPIAQQI EESKSTEEGS SVSSPTTTTT NLLNMVATNL NSPTSNSLGS NKTIFSKSLE 240 VSTTSGSSAD SSVSEFGATL GNSSDVGSPH FENSVQVVST QASSSARLLN KMASKFALMN 300 RLKAMLCDRK QPIVSGTSID DCTRSGSDGG TSLFKDSKPD FFHFDGVLGT CRGETCNQLD 360 LAIELDHHDQ ALPVEVTDDQ RERERIKDGT FDKESRSFSN GIDLEEQVSV FNNTGSNSYD 420 GSSPVEVMVS DLEAANNWRD YIYFDEFLDA ASLD

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MGRAPCCNGQ GLKKGSWTTQ EDQKLVAYIT QNGEGGWRTL PQKAGLLRCG KSCRLRWTNY  60
LKPGIKRGNF SHEEEETIIK LHSVIGNKWS TIAKQLPRRT DNEIKNHWHT RLRRLVAEMG  120
IDHFLTSTNI ESHVAKHDIG INAATEESRK KKLKAIESEG SVSTSFHLLN EEASRFKASS  180
TPASPIAQQI EESKSTEEGS SVSSPTTTTT NLLNMVATNL NSPTSNSLGS NKTIFSKSLE  240
VSTTSGSSAD SSVSEFGATL GNSSDVGSPH FENSVQVVST QASSSARLLN KMASKFALMN  300
RLKAMLCDRK QPIVSGTSID DCTRSGSDGG TSLFKDSKPD FFHFDGVLGT CRGETCNQLD  360
LAIELDHHDQ ALPVEVTDDQ RERERIKDGT FDKESRSFSN GIDLEEQVSV FNNTGSNSYD  420
GSSPVEVMVS DLEAANNWRD YIYFDEFLDA ASLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74080.1	5e-62	MYB family protein