PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON89958.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 559aa MW: 63020.1 Da PI: 4.6394

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON89958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.8	2e-13	320	363	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ +Lr+l+Pk + Kl+ a+iL A+eY+k+Lq PON89958.1 320 VAERRRRKKLNERLYTLRSLVPKiS------KLDRASILGDAIEYVKDLQ 363 58*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MERLRPLVGL KGWDYCVLWR LSEDQRFIEW MNCCCAGTEN TVQNGGDEEL LFPVSPVLPC 60 RDTMIQHPRA NCCDLLDQLP TSMPLDSGIY AQTLVSNQPS WLNFSTVTCP HVLEESVGTR 120 VLVPLPVALI ELYVNKQISE DQNVIDFITA QCNISMEQEG LINTNNLDTS FSVNVNTMSE 180 TQSRPFLGNE LPYDISVDQT RLCNSSTNMQ QFGYSSENRT ENDAAFFECS HNPSLLSDKQ 240 MDSSVDVLQP SMMTDTANMH MHFMEPITEN KDQQGNEKDS NKQDEGRSNS VSDCSDQIDD 300 EDDGKYRRKS AKGPQCKNLV AERRRRKKLN ERLYTLRSLV PKISKLDRAS ILGDAIEYVK 360 DLQSQAKELQ DELEEHSDND CLKNSGVNGI RNNVSSDILS HGEADFGSKP EHVKAQNEFH 420 LETSGSGSIS KQNQDSDTTN DKAPQMEPQV EVAQIDGNEF FVKVFCEHKP GRFVRLMEAL 480 NSLALEVTNA NVTTFRNLVS NVLKVEKKDS KVVVQADHLR DFLLELTRNP SRGLSEMSKA 540 SENGSSIDYQ HHHNQQPTY

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MERLRPLVGL KGWDYCVLWR LSEDQRFIEW MNCCCAGTEN TVQNGGDEEL LFPVSPVLPC  60
RDTMIQHPRA NCCDLLDQLP TSMPLDSGIY AQTLVSNQPS WLNFSTVTCP HVLEESVGTR  120
VLVPLPVALI ELYVNKQISE DQNVIDFITA QCNISMEQEG LINTNNLDTS FSVNVNTMSE  180
TQSRPFLGNE LPYDISVDQT RLCNSSTNMQ QFGYSSENRT ENDAAFFECS HNPSLLSDKQ  240
MDSSVDVLQP SMMTDTANMH MHFMEPITEN KDQQGNEKDS NKQDEGRSNS VSDCSDQIDD  300
EDDGKYRRKS AKGPQCKNLV AERRRRKKLN ERLYTLRSLV PKISKLDRAS ILGDAIEYVK  360
DLQSQAKELQ DELEEHSDND CLKNSGVNGI RNNVSSDILS HGEADFGSKP EHVKAQNEFH  420
LETSGSGSIS KQNQDSDTTN DKAPQMEPQV EVAQIDGNEF FVKVFCEHKP GRFVRLMEAL  480
NSLALEVTNA NVTTFRNLVS NVLKVEKKDS KVVVQADHLR DFLLELTRNP SRGLSEMSKA  540
SENGSSIDYQ HHHNQQPTY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	328	RRKSAKGPQCKNLVAERRRRKK
2	322	329	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-131	bHLH family protein