PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON89800.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

AP2

Protein Properties

Length: 368aa MW: 41067 Da PI: 8.8998

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON89800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.1	1.8e-12	60	116	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g PON89800.1 60 SIYRGVTRHRWTGRYEAHLWDkNCWNDsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 116 57*****************99998888888888******************98 PP
2	AP2	51.2	3.2e-16	159	210	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PON89800.1 159 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 210 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MAKVSRKSQK NTAPTTNKGG SDDNNNNNNN NNNNNKTAKT KAIKRTRKSV PRDSPPRRSS 60 IYRGVTRHRW TGRYEAHLWD KNCWNDSQNK KGRQGAYDDE EAAAHAYDLA ALKYWGQDTI 120 LNFPLSTYQE ELKEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV 180 FGNKYLYLGT YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLRPTN QNSPNNFQPN 240 PNGDLINSTP NDNPQRSDLI SSSVGDSAGV PPRNGGGGAS PSSALGLLLQ SSKFKEMLER 300 TSAAPDCPTT PSDVEPPRRS FPEDIQTYFD GQDSGSYTEG DDILFGDLGN TFTFPISAPI 360 FHCEELDA

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MAKVSRKSQK NTAPTTNKGG SDDNNNNNNN NNNNNKTAKT KAIKRTRKSV PRDSPPRRSS  60
IYRGVTRHRW TGRYEAHLWD KNCWNDSQNK KGRQGAYDDE EAAAHAYDLA ALKYWGQDTI  120
LNFPLSTYQE ELKEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV  180
FGNKYLYLGT YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLRPTN QNSPNNFQPN  240
PNGDLINSTP NDNPQRSDLI SSSVGDSAGV PPRNGGGGAS PSSALGLLLQ SSKFKEMLER  300
TSAAPDCPTT PSDVEPPRRS FPEDIQTYFD GQDSGSYTEG DDILFGDLGN TFTFPISAPI  360
FHCEELDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-91	AP2 family protein