PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON89218.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C2H2
Protein Properties Length: 376aa    MW: 42690.2 Da    PI: 6.8864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON89218.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-05209228120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  n++ H+
  PON89218.1 209 FSCPLCFKTFNRYNNMQMHM 228
                 89*****************9 PP
2zf-C2H214.40.00011293315123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk F  + + ++H +++
  PON89218.1 293 FMCRKCGKAFAVRGDWRTHEKNC 315
                 89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MSTDPYSNYL NGSLNLNPVH HHHFSSNSSN NPYFPSPYYD YNTTNICFNK NINIENTSLP  60
SSPPSPPLKE ALPLLSLSPT RSYHDDQDHN HLESSLILSH HHDDEHMKNK EKSEESSLFL  120
SSATSHDHDE TVTVALHLGL PSPSTTSSAD LISRLSSTEI YDKDRQEEEE DHVSPVVSSG  180
FHSDRSSILN KGQYWIPTPA QILIGPTQFS CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE  240
SLRGTQPTAM LRLPCFCCAP GCRNNIEHPR SRPLKDFRTL QTHYKRKHGI KPFMCRKCGK  300
AFAVRGDWRT HEKNCGKLWY CTCGSDFKHK RSLKDHIKAF GNGHAPYGVD CFDQEDDEGE  360
GASEVSTEQE NNNDFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-128C2H2 family protein