PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON89172.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 631aa MW: 69522 Da PI: 6.7319

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON89172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.5e-06	317	337	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++ C++Gd+C +aHg PON89172.1 317 PCPDHRK-AKCRRGDSCEYAHG 337 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MCGGTEQFNS KTRQESESES ESFNSRTRRA SESESESESD AKAMNNPNET DVVSEPSISV 60 LLELAADDDV ERFKQCINDG CLINEAGLWY CRQRAAKRMA FMGRTPLMVA AMNGSLEVVK 120 LILSMPNVDI NRYCDPDKST ALHCAASSGT IAAIDVVKLL LLAGADLNAT DCNGHRPFDV 180 IVSPPNLANL KVALEEVLKS DGSACQSSSI PSSPSLPSSP EKGSSSSLFD STTLPTTYEP 240 NDLHISPASK KKVYPIDPSI PDIKNSIYST DEFRMFSFKI RPCSRTYSHD WKECPFVHPG 300 ENARRRDPKK FHYSCVPCPD HRKAKCRRGD SCEYAHGVFE SLLHPAQYRT QICKDGTSCP 360 RRVCFFAHTS EELRPVYQST GSAVPSHRSA TSAATAIDIA PALNLSPGSP SVPILMPPSN 420 GISQASMPWP QQKIPTLQLP GSHLQMSRLR SFNARNVPVE SFQLQQKRPS MPSDLNELFS 480 SKVISPRYSL FSPSQNPALF NKLQLQDSML SPVKTNSFSP TYFEHASLGD FLPGMMSSQG 540 IEPQFPFSSG VYAFGKSENQ QQQLRSFGSR DLGSRSLPFR DTRELDLSLV QSLVKQSPSD 600 INETTRFSVS DATHSGEYSD LRPLDQTGSE Y

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MCGGTEQFNS KTRQESESES ESFNSRTRRA SESESESESD AKAMNNPNET DVVSEPSISV  60
LLELAADDDV ERFKQCINDG CLINEAGLWY CRQRAAKRMA FMGRTPLMVA AMNGSLEVVK  120
LILSMPNVDI NRYCDPDKST ALHCAASSGT IAAIDVVKLL LLAGADLNAT DCNGHRPFDV  180
IVSPPNLANL KVALEEVLKS DGSACQSSSI PSSPSLPSSP EKGSSSSLFD STTLPTTYEP  240
NDLHISPASK KKVYPIDPSI PDIKNSIYST DEFRMFSFKI RPCSRTYSHD WKECPFVHPG  300
ENARRRDPKK FHYSCVPCPD HRKAKCRRGD SCEYAHGVFE SLLHPAQYRT QICKDGTSCP  360
RRVCFFAHTS EELRPVYQST GSAVPSHRSA TSAATAIDIA PALNLSPGSP SVPILMPPSN  420
GISQASMPWP QQKIPTLQLP GSHLQMSRLR SFNARNVPVE SFQLQQKRPS MPSDLNELFS  480
SKVISPRYSL FSPSQNPALF NKLQLQDSML SPVKTNSFSP TYFEHASLGD FLPGMMSSQG  540
IEPQFPFSSG VYAFGKSENQ QQQLRSFGSR DLGSRSLPFR DTRELDLSLV QSLVKQSPSD  600
INETTRFSVS DATHSGEYSD LRPLDQTGSE Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	1e-171	C3H family protein