PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88934.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 553aa    MW: 61483.4 Da    PI: 6.3465
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS257.35.5e-791685472374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL  cA a+++g+ +++q+l+  l+elas +gd+++Rla++ ++AL +++++s+s  ++ + + + s+ +     ++l  f+evsP++ f + +aN+
  PON88934.1 168 EQLLNPCAAAITEGNCTRVQHLVYVLHELASLTGDANHRLAFHGLRALTHHISSSGSAYSAPVGTVTFSSAEPRFFQKSLIKFYEVSPWFAFPNNIANS 266
                 689***************************************************9999999999999997777777777777***************** PP

        GRAS 101 aIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakr 185
                  Il+ + +e    + +Hi+D+++s+G+QWp Ll+aL+ R+ ++pp +RiT ++  +++         +     +  +rL  fA+++++++++n l  + 
  PON88934.1 267 SILQLLGEEtdrtRNLHILDIGVSHGVQWPILLEALTRRSgGPPPLVRITIIAGTAETdqntatpfsKGPPGDNFSSRLLCFAKSMNINLQINRLDNQP 365
                 ***9998888777889************************55666*****99886666678889998888899*********************9999* PP

        GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpresee 281
                 l++l+ ++++ + +E+l+V+ +++lh+l +   ++ +er+e+L+ +++++Pk v+++e+++++   + ++F+++f++ +ey + ++ds+++ +    + 
  PON88934.1 366 LQNLNAQTINSSDNETLIVCAQFRLHHLSH---NTLDERTEFLRSLRRIEPKGVILSENDIECscsSCGNFAAGFSRRVEYLWRFLDSTSSAF----KG 457
                 ****************************84...4444577*******************96663244459*******************8886....88 PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 r + Er+l++ e+ ++++++g++    +e +ekW er++ aGF   +l+e++ +  ++llrk++ ++++rvee++g + l Wk++p+ ++S W+
  PON88934.1 458 RESSERQLMEGEAAKALTNRGEM----NEGKEKWCERMRGAGFVGEALGEDTIDGGRALLRKYDsNWEMRVEEKDGFAGLRWKGQPVSFCSLWK 547
                 999999999999*******9999....9************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    
MTSEEPEPNP TSDHIMDWLE DSVSFLPSFL DDPYHSGEIN GYQWWDENQD TGHDLIHTLD  60
TSLNSPSPDA AATTVTANPV NPTISNHLPL PNSAKKRKSA DDPIPKTSQN HHNHRRNHGR  120
RIIQAEDGDA AVEEVVAIRK SVGNRKNSAK ATGNNCNNSN NKEGRWAEQL LNPCAAAITE  180
GNCTRVQHLV YVLHELASLT GDANHRLAFH GLRALTHHIS SSGSAYSAPV GTVTFSSAEP  240
RFFQKSLIKF YEVSPWFAFP NNIANSSILQ LLGEETDRTR NLHILDIGVS HGVQWPILLE  300
ALTRRSGGPP PLVRITIIAG TAETDQNTAT PFSKGPPGDN FSSRLLCFAK SMNINLQINR  360
LDNQPLQNLN AQTINSSDNE TLIVCAQFRL HHLSHNTLDE RTEFLRSLRR IEPKGVILSE  420
NDIECSCSSC GNFAAGFSRR VEYLWRFLDS TSSAFKGRES SERQLMEGEA AKALTNRGEM  480
NEGKEKWCER MRGAGFVGEA LGEDTIDGGR ALLRKYDSNW EMRVEEKDGF AGLRWKGQPV  540
SFCSLWKLDM NDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-176GRAS family protein