PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88912.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

AP2

Protein Properties

Length: 588aa MW: 64695.8 Da PI: 6.7208

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.4	6.1e-12	255	311	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g PON88912.1 255 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 311 78*****************433.44555535555.779999************98 PP
2	AP2	46.4	9.8e-15	356	405	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PON88912.1 356 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 405 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MSNWLGFSLT PHLRIHEGFQ AGREEDQDVH GGGGFPHPHP HHHHHHPISV MPLRSDGSLC 60 VPAQDWRYEN PNEEEGPKLE DFLGCCYSSS HHQAPDETKV YFHNQDHEQN PETISEINVN 120 LAPSFNPNST NGVELEIESS SARENHHPTN PSSLIQSYGH YNSDSSGMYK SWTLGQTLPY 180 NDVSDKSSSS EANGAGCGFQ TLSLTMSPSS QNGVGAISSL QVAAADGGRK RSGGKSLVKE 240 PVPRKSLDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQG GYDKEEKAAR 300 AYDLAALKYW GPTTHINFPL SSYEKELEEM KDMTRQEFVA NLRRKSSGFS RGASMYRGVT 360 RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGTSAVT NFDISRYDVK 420 RICSSSTLIA GDLAKRSSPK DHSPAVASLE VDFNTCPSSP SPQPLLAITS GEPSNELVDM 480 VWSTTSANAD EHHPPQEIDS ETNNNMMFVG SNGRNSLNPQ SPKCSYGSSG EFGGGSGGGE 540 YAHAYFMHGS SISGKYDQHG NNGGNEHSRV GNLGLVQPHV PMFALWNE

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MSNWLGFSLT PHLRIHEGFQ AGREEDQDVH GGGGFPHPHP HHHHHHPISV MPLRSDGSLC  60
VPAQDWRYEN PNEEEGPKLE DFLGCCYSSS HHQAPDETKV YFHNQDHEQN PETISEINVN  120
LAPSFNPNST NGVELEIESS SARENHHPTN PSSLIQSYGH YNSDSSGMYK SWTLGQTLPY  180
NDVSDKSSSS EANGAGCGFQ TLSLTMSPSS QNGVGAISSL QVAAADGGRK RSGGKSLVKE  240
PVPRKSLDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQG GYDKEEKAAR  300
AYDLAALKYW GPTTHINFPL SSYEKELEEM KDMTRQEFVA NLRRKSSGFS RGASMYRGVT  360
RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGTSAVT NFDISRYDVK  420
RICSSSTLIA GDLAKRSSPK DHSPAVASLE VDFNTCPSSP SPQPLLAITS GEPSNELVDM  480
VWSTTSANAD EHHPPQEIDS ETNNNMMFVG SNGRNSLNPQ SPKCSYGSSG EFGGGSGGGE  540
YAHAYFMHGS SISGKYDQHG NNGGNEHSRV GNLGLVQPHV PMFALWNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-129	AP2 family protein