PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88795.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family bHLH
Protein Properties Length: 343aa    MW: 38710.6 Da    PI: 7.3687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14213259455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+  ErrRRd+iN ++ +L+ l+P++      K +Ka+iL  A+ Y+k Lq
  PON88795.1 213 LHSLSERRRRDKINRKMRTLQALIPNC-----NKADKASILDDAIVYLKALQ 259
                 5999**********************8.....6******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MEEFVELVWE NDEIVRRRPS TFVLSQRGST LTAVGGDEGR MLYKKIDNHQ TNTTPTRNVF  60
ELFSSPTPTQ HRQLASADHS DDRHRPPLLN LIKTSTSPHD HHQQPKTVKP PLPVDHAMYL  120
VPDDHDHDDR QTPVLDQDHQ NYYCASCNHN QNQEEALVPS INSGGASNDH HLPNALHGVE  180
QQEEQEQEPL TLTKRVPALR ATRAKRDAPA TRLHSLSERR RRDKINRKMR TLQALIPNCN  240
KADKASILDD AIVYLKALQL QAQMMSTGTG LNLMNPMVLP NNGALVPHLS YFSPMLPITS  300
RLGVQMFGFP VPASHPSFMP WHVPPSSQVP SLQTPFTYST QNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERRRRD
2219224RRRRDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.13e-15bHLH family protein