PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88567.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92103.4 Da    PI: 6.4322
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181674357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PON88567.1 16 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                5679*****************************************************97 PP
2START180.21.2e-561603682205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+ ++  g+++l + +l
  PON88567.1 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVVNVLPTAngGTIELLYLQL 257
                 7899******************************************************.8888888888****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++
  PON88567.1 258 YAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQ 356
                 ***************************************9998899***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt++a+l+++++
  PON88567.1 357 KTTMAALRQLRQ 368
                 ********9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    
MAMSCKDGKP GLDNGKYVRY TPEQVEALER LYHDCPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV YENGYFRQHT  120
QSTTLATKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDRPSWF RDCRAVDVVN  240
VLPTANGGTI ELLYLQLYAP TTLAPARDFW LLRYTSVLED GSLVVCERSL KNTQNGPTMP  300
PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV DHMDLEPWSV PEVLRPLYES STVLAQKTTM  360
AALRQLRQIA HEVSQSNVTG WGRRPAALRV LSQRLSRGFN EALNGFTDEG WSMMGNDGMD  420
DVTILVNSSP DKLMGLNLSF ANEFPAVSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNIDAYSAA AVKVGPCSLA GSRVGSFGGQ VILPLAHTIE HDEFLEVIKL EGVGHSPEDA  540
MMPREMFLLQ LCSGMDENAV GSCAELIFAP IDASFADDAP LLPSGFRIIP LDSGKEASSP  600
NRTLDLASAL EIGPNGTKAS SDYSANNGCV RSVMTIAFEF AFESHMQEHV ASMARQYVRS  660
IISSVQRVAL ALSPSHLSSH AGLRSPLGTP EAQTLARWIC NSYRCYLGVE LLKSSGEGSE  720
SNLKTLWHHS DAVMCCSMKA LPVFTFANQA GLDMLETTLV ALQDISLEKI FDDHGRKTLC  780
SEFPQIMQQG FSCLQGGICL SSMGRPVSYE RAVAWKVLNE EENAHCICFM FVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein