PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88418.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 764aa    MW: 84302.4 Da    PI: 5.806
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21110165156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  PON88418.1 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165
                 7999************************************************9877 PP
2START230.35.5e-722815023206
                 HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
       START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                  ++ ++el+k+a+a+ep+W +s+    e++n+de+l++f+ ++      +s+ea+r++gvv+ +l +lv++++d++ qW+e+++    ka+t++vis+g
  PON88418.1 281 VNQSMEELIKMATAGEPLWIRSVetgrEILNYDEYLKEFAVENPtkgpkRSIEASREVGVVFVDLSRLVQSFVDVN-QWKEMFPfmisKAATVDVISNG 378
                 57889**********************************88887999*****************************.********************** PP

                 ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
       START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                       ga+qlm+aelq+l+p+vp R+++fvRy++ql+a++w++vdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kvtwveh +++++++h +
  PON88418.1 379 egdnknGAVQLMFAELQMLTPMVPtREVYFVRYCKQLNAEQWAVVDVSIDKVEENI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSTVHTM 476
                 ******************************************************98.9***************************************** PP

                 HHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 181 lrslvksglaegaktwvatlqrqcek 206
                 +r +v+sgla+ga++w atlq qce+
  PON88418.1 477 YRTIVNSGLAFGARHWIATLQLQCER 502
                 ************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    
MGVDMSNTPP NSRTKDYFAS PALSLSLAGI FRDAGKAAAA AAAVNMEVEE GDEGSGGGGG  60
GGGGSGRKDD TILEISSENS GPARSRSDDD FEAEGEEDDG DGDKSKKKKR KKYHRHTAEQ  120
IREMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR RTQIKAIQER HENSLLKSEI  180
DRLRDENKAL REQINKSCCP NCGTATVSKD PTITTEEQQL RIENAKLKAE VEKLKATIRK  240
YPAGTASPSS SSVGNDQETR SSLEFYTGIF GLEKSRIMEI VNQSMEELIK MATAGEPLWI  300
RSVETGREIL NYDEYLKEFA VENPTKGPKR SIEASREVGV VFVDLSRLVQ SFVDVNQWKE  360
MFPFMISKAA TVDVISNGEG DNKNGAVQLM FAELQMLTPM VPTREVYFVR YCKQLNAEQW  420
AVVDVSIDKV EENIDASLVK CRKRPSGCII EDKSNGHCKV TWVEHLECQK STVHTMYRTI  480
VNSGLAFGAR HWIATLQLQC ERLVFFMATN VPMKDSSGVA TLAGRKSILK LAQRMTWSFC  540
RAIAASSYNT WTKVSSKTGE DIRIASRKNL NDPGEPLGVI LCAVSSVWLP VCPHVLFDFL  600
RDETHRNEWD IITSGGSVEA TMANLAKGQD RGNAVSIQTV NSKENNMWIL QDCCTNAYES  660
MVVYAPVDIA GMQSVMTGCD SSNLAVLPSG FSILPDGIES RPLVITSRPE EKTSEGGSLL  720
TVAFQILTNS SPTAKLTIES VDSVNTLISC TLKNIKTSLQ CEEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111KKKKRK
2106112KKKKRKK
3108112KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein